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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
B3galnt1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 MGI:1349405 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30451955 MPD | dbSNP | MGI SNP Detail | Chr3:69376780 | f | B3galnt1 : Locus-Region | 1 | SNP | C | T | C | C/T | ||||||||||||||
| rs31014640 MPD | dbSNP | MGI SNP Detail | Chr3:69376809 | f | B3galnt1 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | C | T | C/T | ||
| rs31014642 MPD | dbSNP | MGI SNP Detail | Chr3:69376812 | f | B3galnt1 : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | ||||
| rs31015464 MPD | dbSNP | MGI SNP Detail | Chr3:69376834 | f | B3galnt1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | A | G | A/G | ||||
| rs30402977 MPD | dbSNP | MGI SNP Detail | Chr3:69377064 | f | B3galnt1 : Locus-Region | 1 | SNP | A | A | G | A | A/G | |||||||||||||
| rs30809270 MPD | dbSNP | MGI SNP Detail | Chr3:69377307 | f | B3galnt1 : Locus-Region | 2 | SNP | G | G | G | G | A | A | G | G | A | A | G | A | G | A | A | A/G | ||
| rs30107257 MPD | dbSNP | MGI SNP Detail | Chr3:69377556 | f | B3galnt1 : Locus-Region | 1 | SNP | T | T | C | T | C/T | |||||||||||||
| rs31489967 MPD | dbSNP | MGI SNP Detail | Chr3:69377566 | f | B3galnt1 : Locus-Region | 1 | SNP | T | T | C | T | C/T | |||||||||||||
| rs30214613 MPD | dbSNP | MGI SNP Detail | Chr3:69377572 | f | B3galnt1 : Locus-Region | 1 | SNP | C | C | G | C | C/G | |||||||||||||
| rs31015467 MPD | dbSNP | MGI SNP Detail | Chr3:69377677 | f | B3galnt1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | G | G | G | C/G | ||
| rs31015469 MPD | dbSNP | MGI SNP Detail | Chr3:69377869 | f | B3galnt1 : Locus-Region | 1 | SNP | T | T | C | T | C | T | T | T | C | T | T | C | C/T | |||||
| rs30400884 MPD | dbSNP | MGI SNP Detail | Chr3:69378200 | f | B3galnt1 : mRNA-UTR | 2 | SNP | T | T | T | T | C | T | T | C | C | T | C | T | C | C/T | ||||
| rs31015472 MPD | dbSNP | MGI SNP Detail | Chr3:69378247 | f | B3galnt1 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | C | T | T | C | C/T | |||
| rs31016354 MPD | dbSNP | MGI SNP Detail | Chr3:69378254 | f | B3galnt1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||||
| rs31016356 MPD | dbSNP | MGI SNP Detail | Chr3:69378714 | f | B3galnt1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C/T | |||||
| rs13459924 MPD | dbSNP | MGI SNP Detail | Chr3:69378765 | r | B3galnt1 : mRNA-UTR | 1 | SNP | G | G | A | G | A/G | |||||||||||||
| rs31016358 MPD | dbSNP | MGI SNP Detail | Chr3:69379033 | f | B3galnt1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A | G | A/G | ||
| rs31016360 MPD | dbSNP | MGI SNP Detail | Chr3:69379111 | f | B3galnt1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | A/G | |||
| rs31016362 MPD | dbSNP | MGI SNP Detail | Chr3:69379321 | f | B3galnt1 : Coding-Synonymous | 2 | SNP | A | A | A | A | G | G | A | G | A | A | A | G | A | A/G | ||||
| rs31016363 MPD | dbSNP | MGI SNP Detail | Chr3:69379877 | f | B3galnt1 : mRNA-UTR | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||
| rs31017225 MPD | dbSNP | MGI SNP Detail | Chr3:69379967 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||||
| rs33861864 MPD | dbSNP | MGI SNP Detail | Chr3:69380402 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | T | C | C/T | ||||||||||||
| rs31017227 MPD | dbSNP | MGI SNP Detail | Chr3:69380454 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | A/C | ||
| rs31017228 MPD | dbSNP | MGI SNP Detail | Chr3:69380777 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | |||
| rs30758156 MPD | dbSNP | MGI SNP Detail | Chr3:69380920 | f | B3galnt1 : Intron | 1 | SNP | C | T | C | C/T | ||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs30569509 MPD | dbSNP | MGI SNP Detail | Chr3:69381509 | f | B3galnt1 : Intron | 1 | SNP | C | C | T | C | C/T | |||||||||||||
| rs31017230 MPD | dbSNP | MGI SNP Detail | Chr3:69381927 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||
| rs31017232 MPD | dbSNP | MGI SNP Detail | Chr3:69383557 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | G | C | C/G | ||
| rs31017964 MPD | dbSNP | MGI SNP Detail | Chr3:69383749 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | T | G | G | G | G | G | G | G/T | ||
| rs31009764 MPD | dbSNP | MGI SNP Detail | Chr3:69383830 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | C/T | |||
| rs31009766 MPD | dbSNP | MGI SNP Detail | Chr3:69384233 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||
| rs31728407 MPD | dbSNP | MGI SNP Detail | Chr3:69384525 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | A | A/G | |||||||||||||
| rs31009768 MPD | dbSNP | MGI SNP Detail | Chr3:69384576 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | C | T | C/T | |||
| rs31009770 MPD | dbSNP | MGI SNP Detail | Chr3:69384819 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | A/G | ||||
| rs30899291 MPD | dbSNP | MGI SNP Detail | Chr3:69385031 | f | B3galnt1 : Intron | 1 | SNP | C | C | T | C | C/T | |||||||||||||
| rs31009772 MPD | dbSNP | MGI SNP Detail | Chr3:69385447 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | G | C | C/G | ||
| rs30506169 MPD | dbSNP | MGI SNP Detail | Chr3:69385510 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | G | C | C/G | ||||||||||||
| rs31010704 MPD | dbSNP | MGI SNP Detail | Chr3:69385535 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||
| rs31010705 MPD | dbSNP | MGI SNP Detail | Chr3:69385833 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C/T | ||||||||
| rs31010706 MPD | dbSNP | MGI SNP Detail | Chr3:69386008 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs30118487 MPD | dbSNP | MGI SNP Detail | Chr3:69387901 | f | B3galnt1 : Intron | 1 | SNP | C | C | A | A/C | ||||||||||||||
| rs31010708 MPD | dbSNP | MGI SNP Detail | Chr3:69388239 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | |||
| rs31010709 MPD | dbSNP | MGI SNP Detail | Chr3:69390498 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A/G | |||||||
| rs31010711 MPD | dbSNP | MGI SNP Detail | Chr3:69390609 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | G | T | G/T | |||
| rs31010712 MPD | dbSNP | MGI SNP Detail | Chr3:69391273 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | A | C | A | A | A | A | A/C | ||||||
| rs30120222 MPD | dbSNP | MGI SNP Detail | Chr3:69391711 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | G | G/T | |||||||||||||
| rs31011964 MPD | dbSNP | MGI SNP Detail | Chr3:69391978 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | C | T | C | T | C | C | C/T | |||
| rs31011966 MPD | dbSNP | MGI SNP Detail | Chr3:69392083 | f | B3galnt1 : Intron | 1 | SNP | G | A | G | A/G | ||||||||||||||
| rs31011967 MPD | dbSNP | MGI SNP Detail | Chr3:69392341 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | |||
| rs31011969 MPD | dbSNP | MGI SNP Detail | Chr3:69392358 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31011970 MPD | dbSNP | MGI SNP Detail | Chr3:69392655 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | |||
| rs31011972 MPD | dbSNP | MGI SNP Detail | Chr3:69392713 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs31012994 MPD | dbSNP | MGI SNP Detail | Chr3:69392849 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | G | T | T | T | T | T | T | G/T | |||
| rs31012996 MPD | dbSNP | MGI SNP Detail | Chr3:69392871 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | ||||
| rs31012998 MPD | dbSNP | MGI SNP Detail | Chr3:69393077 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C/T | ||||
| rs31013000 MPD | dbSNP | MGI SNP Detail | Chr3:69393108 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | T | C/T | ||||||
| rs31013002 MPD | dbSNP | MGI SNP Detail | Chr3:69393320 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | C | G | G | G | G | G | C/G | |||||
| rs31013824 MPD | dbSNP | MGI SNP Detail | Chr3:69394939 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A/G | |||||
| rs31013826 MPD | dbSNP | MGI SNP Detail | Chr3:69395167 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | ||||
| rs31013828 MPD | dbSNP | MGI SNP Detail | Chr3:69395169 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||
| rs31013830 MPD | dbSNP | MGI SNP Detail | Chr3:69395595 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C/T | |||||||
| rs31013832 MPD | dbSNP | MGI SNP Detail | Chr3:69395725 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | C | T | C | T | C | C | C/T | |||
| rs31014664 MPD | dbSNP | MGI SNP Detail | Chr3:69395833 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | A | C | C | C | C | C | C | A/C | |||
| rs31014666 MPD | dbSNP | MGI SNP Detail | Chr3:69395867 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | A/G | ||||
| rs31014668 MPD | dbSNP | MGI SNP Detail | Chr3:69395909 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | |||
| rs31014669 MPD | dbSNP | MGI SNP Detail | Chr3:69396475 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | A | C | C | C | C | C | C | A/C | ||||
| rs31014671 MPD | dbSNP | MGI SNP Detail | Chr3:69396666 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs31014673 MPD | dbSNP | MGI SNP Detail | Chr3:69396852 | f | B3galnt1 : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | A/G | ||||
| rs31006993 MPD | dbSNP | MGI SNP Detail | Chr3:69396904 | f | B3galnt1 : Intron | 1 | SNP | T | C | C/T | |||||||||||||||
| rs31015345 MPD | dbSNP | MGI SNP Detail | Chr3:69396905 | f | B3galnt1 : Intron | 1 | SNP | C | T | T | C/T | ||||||||||||||
| rs31015348 MPD | dbSNP | MGI SNP Detail | Chr3:69397448 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C | C | T | C/T | ||||
| rs31015350 MPD | dbSNP | MGI SNP Detail | Chr3:69397717 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs31015351 MPD | dbSNP | MGI SNP Detail | Chr3:69397813 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs30313471 MPD | dbSNP | MGI SNP Detail | Chr3:69398112 | f | B3galnt1 : Intron | 1 | SNP | C | C | T | C | C/T | |||||||||||||
| rs31015353 MPD | dbSNP | MGI SNP Detail | Chr3:69398844 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | A | A | A | G | A | A/G | ||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs31016165 MPD | dbSNP | MGI SNP Detail | Chr3:69398893 | f | B3galnt1 : Intron | 1 | SNP | G | G | G | G | G | A | A | A | G | G | A | A/G | ||||||
| rs31016167 MPD | dbSNP | MGI SNP Detail | Chr3:69399092 | f | B3galnt1 : Intron | 1 | SNP | T | T | T | T | T | T | C | C | T | C | T | T | C | C/T | ||||
| rs31016169 MPD | dbSNP | MGI SNP Detail | Chr3:69399334 | f | B3galnt1 : Intron | 1 | SNP | C | C | C | C | C | C | C | A | A | C | A | C | C | A | A/C | |||
| rs31485065 MPD | dbSNP | MGI SNP Detail | Chr3:69402387 | f | B3galnt1 : Intron | 1 | SNP | C | C | G | C | C/G | |||||||||||||
| rs33862289 MPD | dbSNP | MGI SNP Detail | Chr3:69402528 | f | B3galnt1 : Intron | 1 | SNP | G | G | C | C/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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