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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Sgca sarcoglycan, alpha (dystrophin-associated glycoprotein) MGI:894698 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs29471080 MPD | dbSNP | MGI SNP Detail | Chr11:94823216 | f | Sgca : Locus-Region | 1 | SNP | G | A | G | G | A/G | ||||||||||||||
| rs29391370 MPD | dbSNP | MGI SNP Detail | Chr11:94823224 | f | Sgca : Locus-Region | 1 | SNP | G | A | G | G | A/G | ||||||||||||||
| rs29466222 MPD | dbSNP | MGI SNP Detail | Chr11:94823504 | f | Sgca : Locus-Region | 1 | SNP | C | C | T | C | C | C/T | |||||||||||||
| rs27060307 MPD | dbSNP | MGI SNP Detail | Chr11:94823524 | f | Sgca : Locus-Region | 2 | SNP | A | A | G | A | A | G | A | A | A | A | A | A | G | A | A/G | ||||
| rs29457541 MPD | dbSNP | MGI SNP Detail | Chr11:94823527 | f | Sgca : Locus-Region | 1 | SNP | G | G | T | G | G | G/T | |||||||||||||
| rs27060306 MPD | dbSNP | MGI SNP Detail | Chr11:94823742 | f | Sgca : Locus-Region | 1 | SNP | A | G | A | G | G | A | A | A | A | A | A | G | A | A/G | |||||
| rs29392073 MPD | dbSNP | MGI SNP Detail | Chr11:94823758 | f | Sgca : Locus-Region | 1 | SNP | T | C | T | T | C/T | ||||||||||||||
| rs27060305 MPD | dbSNP | MGI SNP Detail | Chr11:94823775 | f | Sgca : Locus-Region | 2 | SNP | A | G | G | A | G | A | G | A | A | G | A | A | A | A | G | A | A/G | ||
| rs27060304 MPD | dbSNP | MGI SNP Detail | Chr11:94823887 | f | Sgca : Locus-Region | 2 | SNP | C | T | C | C | C | C | C | C | C | C | C | C | C/T | ||||||
| rs29451776 MPD | dbSNP | MGI SNP Detail | Chr11:94823889 | f | Sgca : Locus-Region | 1 | SNP | A | G | A | A | A/G | ||||||||||||||
| rs27060303 MPD | dbSNP | MGI SNP Detail | Chr11:94824099 | f | Sgca : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | |||
| rs6410771 MPD | dbSNP | MGI SNP Detail | Chr11:94824177 | f | Sgca : Locus-Region | 1 | SNP | T | C | C/T | ||||||||||||||||
| rs27060302 MPD | dbSNP | MGI SNP Detail | Chr11:94824265 | f | Sgca : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||
| rs27060301 MPD | dbSNP | MGI SNP Detail | Chr11:94824284 | f | Sgca : Locus-Region | 2 | SNP | C | C | A | C | A | C | C | C | C | C | C | C | A/C | ||||||
| rs27060300 MPD | dbSNP | MGI SNP Detail | Chr11:94824732 | f | Sgca : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27060299 MPD | dbSNP | MGI SNP Detail | Chr11:94824794 | f | Sgca : Intron | 1 | SNP | A | C | C | A | C | C | A | A | C | A | A | A | A | C | A | A/C | |||
| rs27060298 MPD | dbSNP | MGI SNP Detail | Chr11:94824835 | f | Sgca : Intron | 1 | SNP | A | G | G | A | G | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs29395309 MPD | dbSNP | MGI SNP Detail | Chr11:94825078 | f | Sgca : Intron | 1 | SNP | T | A | T | A/T | |||||||||||||||
| rs27060297 MPD | dbSNP | MGI SNP Detail | Chr11:94825082 | f | Sgca : Intron | 1 | SNP | T | T | T | C | T | T | T | T | T | C/T | |||||||||
| rs29442350 MPD | dbSNP | MGI SNP Detail | Chr11:94825598 | f | Sgca : Intron | 1 | SNP | A | C | A/C | ||||||||||||||||
| rs29478740 MPD | dbSNP | MGI SNP Detail | Chr11:94825613 | f | Sgca : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs29387714 MPD | dbSNP | MGI SNP Detail | Chr11:94825639 | f | Sgca : Intron | 3 | SNP | T | A | A/C/T | ||||||||||||||||
| rs27060296 MPD | dbSNP | MGI SNP Detail | Chr11:94825733 | f | Sgca : Intron | 1 | SNP | G | A | A | G | A | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27060295 MPD | dbSNP | MGI SNP Detail | Chr11:94825778 | f | Sgca : Intron | 1 | SNP | C | C | C | C | G | C | C | C | C | C | C/G | ||||||||
| rs6184075 MPD | dbSNP | MGI SNP Detail | Chr11:94825854 | f | Sgca : Intron | 1 | SNP | A | T | A/T | ||||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs6184134 MPD | dbSNP | MGI SNP Detail | Chr11:94825854 | f | Sgca : Intron | 1 | SNP | G | T | G/T | ||||||||||||||||
| rs6185754 MPD | dbSNP | MGI SNP Detail | Chr11:94826167 | f | Sgca : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs6185775 MPD | dbSNP | MGI SNP Detail | Chr11:94826177 | f | Sgca : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs6185792 MPD | dbSNP | MGI SNP Detail | Chr11:94826188 | f | Sgca : Intron | 1 | SNP | T | C | C/T | ||||||||||||||||
| rs27060294 MPD | dbSNP | MGI SNP Detail | Chr11:94826520 | f | Sgca : Intron | 1 | SNP | C | G | C | G | G | C | G | C | C | C | C | C | C/G | ||||||
| rs27060293 MPD | dbSNP | MGI SNP Detail | Chr11:94826558 | f | Sgca : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs27060292 MPD | dbSNP | MGI SNP Detail | Chr11:94826619 | f | Sgca : Intron | 1 | SNP | C | T | T | C | T | T | C | C | C | C | C | C | C | C/T | |||||
| rs27060291 MPD | dbSNP | MGI SNP Detail | Chr11:94826631 | f | Sgca : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C/T | ||||||||
| rs27060290 MPD | dbSNP | MGI SNP Detail | Chr11:94826644 | f | Sgca : Intron | 1 | SNP | C | C | T | C | T | T | T | T | T | T | C/T | ||||||||
| rs29438296 MPD | dbSNP | MGI SNP Detail | Chr11:94828248 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | A | C | C | A/C | |||||||||||||||
| rs29454750 MPD | dbSNP | MGI SNP Detail | Chr11:94828261 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | T | C | C | C/T | |||||||||||||||
| rs29453357 MPD | dbSNP | MGI SNP Detail | Chr11:94828602 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | A | C | A | A | A/C | ||||||||||||||
| rs27060289 MPD | dbSNP | MGI SNP Detail | Chr11:94828758 | f | Hils1 : Locus-Region Sgca : Intron | 2 | SNP | A | A | G | G | A | G | A | G | A | A | A | A | A | A | A | A/G | |||
| rs27060288 MPD | dbSNP | MGI SNP Detail | Chr11:94828792 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | G | G | C | C | C | C/G | |||||||||||||
| rs29443282 MPD | dbSNP | MGI SNP Detail | Chr11:94828795 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | G | A | G | G | A/G | ||||||||||||||
| rs29413170 MPD | dbSNP | MGI SNP Detail | Chr11:94828910 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | G | T | G | G | G/T | ||||||||||||||
| rs13471324 MPD | dbSNP | MGI SNP Detail | Chr11:94829027 | f | Hils1 : mRNA-UTR Sgca : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29425819 MPD | dbSNP | MGI SNP Detail | Chr11:94829169 | f | Hils1 : mRNA-UTR Sgca : Intron | 1 | SNP | G | A | G | G | A/G | ||||||||||||||
| rs27060287 MPD | dbSNP | MGI SNP Detail | Chr11:94829236 | f | Hils1 : Coding-Synonymous Sgca : Intron | 2 | SNP | G | G | A | A | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27060286 MPD | dbSNP | MGI SNP Detail | Chr11:94829433 | f | Hils1 : Coding-NonSynonymous Sgca : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | |||||
| rs27060285 MPD | dbSNP | MGI SNP Detail | Chr11:94829523 | f | Hils1 : Coding-NonSynonymous Sgca : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | |||||
| rs29435421 MPD | dbSNP | MGI SNP Detail | Chr11:94829918 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | C | T | C | C/T | |||||||||||||||
| rs29465694 MPD | dbSNP | MGI SNP Detail | Chr11:94829928 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | A | G | A | A/G | |||||||||||||||
| rs29432081 MPD | dbSNP | MGI SNP Detail | Chr11:94829932 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | C | T | C | C/T | |||||||||||||||
| rs27060284 MPD | dbSNP | MGI SNP Detail | Chr11:94830244 | f | Hils1 : Locus-Region Sgca : Intron | 1 | SNP | C | T | C | T | C | C | C | C | C | C | C | C | C/T | ||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27060283 MPD | dbSNP | MGI SNP Detail | Chr11:94830772 | f | Sgca : Coding-Synonymous | 1 | SNP | T | C | C | T | C | T | T | T | T | T | T | T | T | C/T | |||||
| rs27060282 MPD | dbSNP | MGI SNP Detail | Chr11:94830997 | f | Sgca : Intron | 1 | SNP | C | T | C | T | C | C | C | C | C | C | C | C | C/T | ||||||
| rs27060281 MPD | dbSNP | MGI SNP Detail | Chr11:94831244 | f | Sgca : Intron | 1 | SNP | G | G | G | G | G | A | G | A | G | G | G | G | G | A/G | |||||
| rs27060280 MPD | dbSNP | MGI SNP Detail | Chr11:94831625 | f | Sgca : Intron | 1 | SNP | A | G | A | A | A | A | A | A | A | A | A | A/G | |||||||
| rs27060279 MPD | dbSNP | MGI SNP Detail | Chr11:94831976 | f | Sgca : Intron | 1 | SNP | T | C | C | T | C | C | T | T | T | T | T | T | T | C/T | |||||
| rs27060278 MPD | dbSNP | MGI SNP Detail | Chr11:94832033 | f | Sgca : Coding-Synonymous | 1 | SNP | G | A | G | A | G | G | G | G | G | G | G | G | A/G | ||||||
| rs27060277 MPD | dbSNP | MGI SNP Detail | Chr11:94832132 | f | Sgca : Coding-Synonymous | 1 | SNP | T | C | T | C | T | T | T | T | T | T | T | T | C/T | ||||||
| rs27060276 MPD | dbSNP | MGI SNP Detail | Chr11:94832166 | f | Sgca : Intron | 1 | SNP | G | A | A | G | A | G | G | G | G | G | G | G | G | A/G | |||||
| rs27060275 MPD | dbSNP | MGI SNP Detail | Chr11:94832404 | f | Sgca : Intron | 1 | SNP | A | G | A | G | G | A | A | A | A | A | A | A | A/G | ||||||
| rs27060274 MPD | dbSNP | MGI SNP Detail | Chr11:94832462 | f | Sgca : Intron | 1 | SNP | A | G | G | A | G | A | A | A | A | A | A | A | A/G | ||||||
| rs29444743 MPD | dbSNP | MGI SNP Detail | Chr11:94832539 | f | Sgca : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29406855 MPD | dbSNP | MGI SNP Detail | Chr11:94832743 | f | Sgca : Coding-Synonymous | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs27060273 MPD | dbSNP | MGI SNP Detail | Chr11:94832889 | f | Sgca : Intron | 2 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | |||||
| rs29448044 MPD | dbSNP | MGI SNP Detail | Chr11:94832925 | f | Sgca : Intron | 1 | SNP | G | A | G | G | A/G | ||||||||||||||
| rs27060272 MPD | dbSNP | MGI SNP Detail | Chr11:94833452 | f | Sgca : Intron | 2 | SNP | C | T | T | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||
| rs27060271 MPD | dbSNP | MGI SNP Detail | Chr11:94833531 | f | Sgca : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs27060270 MPD | dbSNP | MGI SNP Detail | Chr11:94833651 | f | Sgca : Coding-Synonymous | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs29465941 MPD | dbSNP | MGI SNP Detail | Chr11:94833874 | f | Sgca : Coding-NonSynonymous | 1 | SNP | G | A | A | A/G | |||||||||||||||
| rs27060269 MPD | dbSNP | MGI SNP Detail | Chr11:94834235 | f | Sgca : Intron | 2 | SNP | C | T | T | C | T | C | C | C | C | C | C | C | C | C | C/T | ||||
| rs27060268 MPD | dbSNP | MGI SNP Detail | Chr11:94834347 | f | Sgca : Intron | 2 | SNP | A | G | G | A | G | A | A | G | A | A | A | A | A | A/G | |||||
| rs29481261 MPD | dbSNP | MGI SNP Detail | Chr11:94834597 | f | Sgca : Intron | 1 | SNP | C | G | G | C/G | |||||||||||||||
| rs27060267 MPD | dbSNP | MGI SNP Detail | Chr11:94834722 | f | Sgca : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | A | G | A | G | A/G | |||||||
| rs27060266 MPD | dbSNP | MGI SNP Detail | Chr11:94834849 | f | Sgca : Intron | 1 | SNP | A | G | A | G | A | G | G | A/G | |||||||||||
| rs27060265 MPD | dbSNP | MGI SNP Detail | Chr11:94835567 | f | Sgca : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | C/T | |||||
| rs27060264 MPD | dbSNP | MGI SNP Detail | Chr11:94835631 | f | Sgca : Intron | 1 | SNP | A | G | G | A | G | A | G | A | A | A | A | A | A/G | ||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27060263 MPD | dbSNP | MGI SNP Detail | Chr11:94835637 | f | Sgca : Intron | 1 | SNP | C | C | T | C | C | C | C | C | C | C/T | |||||||||
| rs27060262 MPD | dbSNP | MGI SNP Detail | Chr11:94836615 | f | Sgca : Intron | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | C/T | ||||||
| rs27060261 MPD | dbSNP | MGI SNP Detail | Chr11:94836651 | f | Sgca : Intron | 2 | SNP | T | T | C | C | T | T | C | T | T | T | T | T | C/T | ||||||
| rs27060260 MPD | dbSNP | MGI SNP Detail | Chr11:94836955 | f | Sgca : Intron | 2 | SNP | A | A | G | G | A | G | A | A | A | A | A | A | A | A | A/G | ||||
| rs27060259 MPD | dbSNP | MGI SNP Detail | Chr11:94837030 | f | Sgca : Intron | 1 | SNP | C | C | T | C | T | T | T | T | T | C/T | |||||||||
| rs27060258 MPD | dbSNP | MGI SNP Detail | Chr11:94837288 | f | Sgca : Intron | 2 | SNP | C | C | T | C | T | C | C | C | C | C | C | C | C | C | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 06/05/2013 MGI 5.13 |
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