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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Col9a3
collagen, type IX, alpha 3
MGI:894686

97 matching SNPs displayed
Full result set is also available in a tab-delimited format.
Include SNPs that map to multiple locations

Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs33466098
MPD | dbSNP | MGI SNP Detail
Chr2:180599462f 1SNPG A   G              A/G
rs47106189
MPD | dbSNP | MGI SNP Detail
Chr2:180599678f 2SNPG     G          GA  A/G
rs27664307
MPD | dbSNP | MGI SNP Detail
Chr2:180602113f 1SNPA         G          A/G
rs27664306
MPD | dbSNP | MGI SNP Detail
Chr2:180603205f 3SNPG A   GA  A     A    A/G
rs27664305
MPD | dbSNP | MGI SNP Detail
Chr2:180604639f 1SNPGG GGGGGAAG GGGG     A/G
rs27664304
MPD | dbSNP | MGI SNP Detail
Chr2:180604652f 1SNPGG GGGGGGGGGGGAG     A/G
rs27664303
MPD | dbSNP | MGI SNP Detail
Chr2:180604670f 1SNPGG GGGGGAAGGGGGG     A/G
rs27664302
MPD | dbSNP | MGI SNP Detail
Chr2:180604937f 1SNPGG GGGGGAAGGG GG     A/G
rs27664301
MPD | dbSNP | MGI SNP Detail
Chr2:180605265f 1SNPGA GG GGGGGGGGGG     A/G
rs27664300
MPD | dbSNP | MGI SNP Detail
Chr2:180605320f 1SNPTC TTTTTCCTTTTTT     C/T
rs27664299
MPD | dbSNP | MGI SNP Detail
Chr2:180605454f 1SNPCC C CC GGC C CC     C/G
rs27664298
MPD | dbSNP | MGI SNP Detail
Chr2:180605498f 1SNPGG GGGGGAAGGGGGG     A/G
rs27664297
MPD | dbSNP | MGI SNP Detail
Chr2:180605525f 1SNPCT CCCCCCCCCCCCC     C/T
rs27664296
MPD | dbSNP | MGI SNP Detail
Chr2:180605602f 1SNPGA GGGGGGGGGGGGG     A/G
rs27664295
MPD | dbSNP | MGI SNP Detail
Chr2:180606234f 1SNPAG AAAAAGGAAAAAA     A/G
rs27664294
MPD | dbSNP | MGI SNP Detail
Chr2:180606588f 1SNPGG GGGGGAAGGG GG     A/G
rs27664293
MPD | dbSNP | MGI SNP Detail
Chr2:180606910f 1SNPCT CCCCCTTCCCCCC     C/T
rs27664292
MPD | dbSNP | MGI SNP Detail
Chr2:180606970f 1SNPAA AAAAAGGAAAAAA     A/G
rs27664291
MPD | dbSNP | MGI SNP Detail
Chr2:180606971f 1SNPCG CCCCC CCCCCCC     C/G
rs27664290
MPD | dbSNP | MGI SNP Detail
Chr2:180606981f 1SNPTT TTTTTAATTT TT     A/T
rs27664289
MPD | dbSNP | MGI SNP Detail
Chr2:180607018f 1SNPAC AAAAAAAAAAAAA     A/C
rs27664288
MPD | dbSNP | MGI SNP Detail
Chr2:180607027f 1SNPCT CCCCCTTCCC CC     C/T
rs27664287
MPD | dbSNP | MGI SNP Detail
Chr2:180607152f 1SNPGG GGGGGAGGGGGGG     A/G
rs6392121
MPD | dbSNP | MGI SNP Detail
Chr2:180607617f 1SNP  G                A A/G
rs27664286
MPD | dbSNP | MGI SNP Detail
Chr2:180607752f 1SNPGT GGGGGGGGGGGGG     G/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs6394428
MPD | dbSNP | MGI SNP Detail
Chr2:180608029f 2SNPTGTTTTTTGGTTTGTT   G G/T
rs27664285
MPD | dbSNP | MGI SNP Detail
Chr2:180608240f 1SNP T CCCCCTTCCCCCC     C/T
rs27664284
MPD | dbSNP | MGI SNP Detail
Chr2:180608297f 1SNPGC GGGGGCCGGGGGG     C/G
rs27664283
MPD | dbSNP | MGI SNP Detail
Chr2:180608387f 1SNPTC TTTTTCCTTT TT     C/T
rs27664282
MPD | dbSNP | MGI SNP Detail
Chr2:180608497f 1SNPGA GGGGGAAGGGGGG     A/G
rs27664281
MPD | dbSNP | MGI SNP Detail
Chr2:180608811f 1SNPTC TTTTTCCTTTCTT     C/T
rs27664280
MPD | dbSNP | MGI SNP Detail
Chr2:180608909f 1SNPCA CCCCCAACCC CC     A/C
rs27664279
MPD | dbSNP | MGI SNP Detail
Chr2:180609627f 1SNPAT AAAAATTAAAAAA     A/T
rs27664278
MPD | dbSNP | MGI SNP Detail
Chr2:180609732f 1SNPAG AAAAAGGAAAAAA     A/G
rs27664277
MPD | dbSNP | MGI SNP Detail
Chr2:180610258f 1SNPCT CCCCCTTCCCCCC     C/T
rs27664276
MPD | dbSNP | MGI SNP Detail
Chr2:180610300f 1SNPGA GGGGGAAGGGGGG     A/G
rs27664275
MPD | dbSNP | MGI SNP Detail
Chr2:180610439f 1SNPAG AAAAAGGAAAAAA     A/G
rs27664274
MPD | dbSNP | MGI SNP Detail
Chr2:180610472f 1SNPGC GGGGGCCGGGGGG     C/G
rs27664273
MPD | dbSNP | MGI SNP Detail
Chr2:180610545f 1SNPGC GGGGGCCGGGGGG     C/G
rs27664272
MPD | dbSNP | MGI SNP Detail
Chr2:180610809f 1SNPAT AAAAATTAAA AA     A/T
rs27664271
MPD | dbSNP | MGI SNP Detail
Chr2:180610898f 1SNPGA GGGGGAAGGGGGG     A/G
rs27664270
MPD | dbSNP | MGI SNP Detail
Chr2:180610916f 1SNPG  GGGGG AGGG  G     A/G
rs27664269
MPD | dbSNP | MGI SNP Detail
Chr2:180610933f 1SNPCT C C C TCCC  C     C/T
rs27664268
MPD | dbSNP | MGI SNP Detail
Chr2:180610965f 1SNPTC TTTTTCCTTT TT     C/T
rs27664267
MPD | dbSNP | MGI SNP Detail
Chr2:180611006f 1SNPGT GGGGGTTGGGGGG     G/T
rs27664266
MPD | dbSNP | MGI SNP Detail
Chr2:180611054f 1SNPGA GGGGGGGGGGGGG     A/G
rs27664265
MPD | dbSNP | MGI SNP Detail
Chr2:180611286f 1SNPTC TTTTTTTTTTTTT     C/T
rs27664264
MPD | dbSNP | MGI SNP Detail
Chr2:180611385f 1SNPGA GGGGGAAGGGGGG     A/G
rs27664263
MPD | dbSNP | MGI SNP Detail
Chr2:180611413f 1SNPCT C C CTTCCCCCC     C/T
rs27664262
MPD | dbSNP | MGI SNP Detail
Chr2:180611597f 1SNPCT CCCCCTTCCCCCC     C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27664261
MPD | dbSNP | MGI SNP Detail
Chr2:180611881f 1SNPTC TTTTT CTTTTTT     C/T
rs27664260
MPD | dbSNP | MGI SNP Detail
Chr2:180612080f 1SNPTC TTTTTCCTTTTTT     C/T
rs27664259
MPD | dbSNP | MGI SNP Detail
Chr2:180612273f 1SNPCT CCCCCTTCCCCCC     C/T
rs6222838
MPD | dbSNP | MGI SNP Detail
Chr2:180612998f 1SNP  A                C A/C
rs6222854
MPD | dbSNP | MGI SNP Detail
Chr2:180613006f 1SNP  G                A A/G
rs6222858
MPD | dbSNP | MGI SNP Detail
Chr2:180613011f 2SNPAGAAAAAA GAAAAAA   G A/G
rs6223411
MPD | dbSNP | MGI SNP Detail
Chr2:180613102f 2SNPTCTTTTTTCCTTTCTT   C C/T
rs6386861
MPD | dbSNP | MGI SNP Detail
Chr2:180613223f 2SNPCTCCCCCCTTCCCCCC   T C/T
rs6387283
MPD | dbSNP | MGI SNP Detail
Chr2:180613278f 2SNPTCTTTTTTCCTTT TT   C C/T
rs6387391
MPD | dbSNP | MGI SNP Detail
Chr2:180613345f 2SNPTCTTTTTTCCTTT TT   C C/T
rs6387806
MPD | dbSNP | MGI SNP Detail
Chr2:180613381f 2SNPTCTTTTTTCCTTTCTT   C C/T
rs27664258
MPD | dbSNP | MGI SNP Detail
Chr2:180614050f 1SNPGG GGGGGAAGGGGGG     A/G
rs27664257
MPD | dbSNP | MGI SNP Detail
Chr2:180614218f 1SNPGA GGGGGGGGGGGGG     A/G
rs27664256
MPD | dbSNP | MGI SNP Detail
Chr2:180614417f 1SNPGG GGGGGAAGGGGGG     A/G
rs27664255
MPD | dbSNP | MGI SNP Detail
Chr2:180614549f 1SNPCC CCCCCTTCCC CC     C/T
rs27664254
MPD | dbSNP | MGI SNP Detail
Chr2:180615132f 1SNPCG CCCCCGGCCC CC     C/G
rs27664253
MPD | dbSNP | MGI SNP Detail
Chr2:180615254f 1SNPAC AAAAACCAAAAAA     A/C
rs27664252
MPD | dbSNP | MGI SNP Detail
Chr2:180615343f 1SNPAG AAAAAGGAAA AA     A/G
rs27664251
MPD | dbSNP | MGI SNP Detail
Chr2:180615642f 1SNPC  CC CC TCCC CC     C/T
rs27664250
MPD | dbSNP | MGI SNP Detail
Chr2:180615743f 1SNPAG AAAAAGGAAA AA     A/G
rs27664249
MPD | dbSNP | MGI SNP Detail
Chr2:180615847f 1SNPTG TTTTTGGTTTGTT     G/T
rs27664248
MPD | dbSNP | MGI SNP Detail
Chr2:180616362f 1SNPAG AAAAAGGAAA AA     A/G
rs27664247
MPD | dbSNP | MGI SNP Detail
Chr2:180616748f 1SNPGA GGGGGAAGGGGGG     A/G
rs27664246
MPD | dbSNP | MGI SNP Detail
Chr2:180616883f 1SNPCT CCCCCTTCCCCCC     C/T
rs27664245
MPD | dbSNP | MGI SNP Detail
Chr2:180616944f 1SNPCA CCCCCAACCCCCC     A/C
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27664244
MPD | dbSNP | MGI SNP Detail
Chr2:180616981f 1SNPGA GGGGG AG GGGG     A/G
rs27664243
MPD | dbSNP | MGI SNP Detail
Chr2:180617100f 1SNPTA TTTTTAATTTTTT     A/T
rs27664242
MPD | dbSNP | MGI SNP Detail
Chr2:180618173f 1SNPCT CCCCC TCCCCCC     C/T
rs27664241
MPD | dbSNP | MGI SNP Detail
Chr2:180618266f 1SNPGA GGGGGAAGGGAGG     A/G
rs27664240
MPD | dbSNP | MGI SNP Detail
Chr2:180618282f 1SNPTC TTTTT CTTTTTT     C/T
rs27664239
MPD | dbSNP | MGI SNP Detail
Chr2:180618414f 1SNPTC TTTTTCCTTT TT     C/T
rs27664238
MPD | dbSNP | MGI SNP Detail
Chr2:180618675f 1SNPCT CCCCCTTCCC CC     C/T
rs33460278
MPD | dbSNP | MGI SNP Detail
Chr2:180618813f 2SNP  A   C         A    A/C
rs33646864
MPD | dbSNP | MGI SNP Detail
Chr2:180619076f 2SNPG A   G   A     A    A/G
rs27664237
MPD | dbSNP | MGI SNP Detail
Chr2:180619444f 1SNPAG AAAAAGGAAAAAA     A/G
rs27664236
MPD | dbSNP | MGI SNP Detail
Chr2:180619650f 1SNPAG AAA AGGAAAAAA     A/G
rs27664235
MPD | dbSNP | MGI SNP Detail
Chr2:180619825f 1SNPGA GGGGGGGGGGGGG     A/G
rs27664234
MPD | dbSNP | MGI SNP Detail
Chr2:180619869f 1SNPAG AAA A GA A  A     A/G
rs27664233
MPD | dbSNP | MGI SNP Detail
Chr2:180620342f 1SNPTT TTTTTTCTTTTTT     C/T
rs27664232
MPD | dbSNP | MGI SNP Detail
Chr2:180620380f 1SNPTC TTTTTCCTTT TT     C/T
rs27664231
MPD | dbSNP | MGI SNP Detail
Chr2:180620439f 1SNPAG AAAAAGGAAA AA     A/G
rs13465703
MPD | dbSNP | MGI SNP Detail
Chr2:180621467f 1SNPCT CCCCCTTCCCCCC     C/T
rs27664230
MPD | dbSNP | MGI SNP Detail
Chr2:180622962f 1SNPCT CCCCCTTCCC CC     C/T
rs27664229
MPD | dbSNP | MGI SNP Detail
Chr2:180622994f 1SNPCG CCCCCGGCCC CC     C/G
rs27664228
MPD | dbSNP | MGI SNP Detail
Chr2:180623482f 2SNPG  GGGGG TGGGGGGG   TG/T
rs51539087
MPD | dbSNP | MGI SNP Detail
Chr2:180623549f 1SNP                A   GA/G
rs27664227
MPD | dbSNP | MGI SNP Detail
Chr2:180624177f 1SNPGA GGGGGAAGGGGGG     A/G

Contributing Projects:
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory