|
Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
|
Symbol Name ID |
Col9a3 collagen, type IX, alpha 3 MGI:894686 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs33466098 MPD | dbSNP | MGI SNP Detail | Chr2:180334167 | f | Col9a3 : Intron | 1 | SNP | G | A | G | A/G | |||||||||||||||
| rs27664307 MPD | dbSNP | MGI SNP Detail | Chr2:180336818 | f | Col9a3 : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs27664306 MPD | dbSNP | MGI SNP Detail | Chr2:180337910 | f | Col9a3 : Intron | 2 | SNP | A | A | G | A | G | A | A/G | ||||||||||||
| rs27664305 MPD | dbSNP | MGI SNP Detail | Chr2:180339344 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | A | G | A/G | ||||
| rs27664304 MPD | dbSNP | MGI SNP Detail | Chr2:180339357 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | |||
| rs27664303 MPD | dbSNP | MGI SNP Detail | Chr2:180339375 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664302 MPD | dbSNP | MGI SNP Detail | Chr2:180339642 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | A | G | A/G | ||||
| rs27664301 MPD | dbSNP | MGI SNP Detail | Chr2:180339970 | f | Col9a3 : Coding-Synonymous | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||
| rs27664300 MPD | dbSNP | MGI SNP Detail | Chr2:180340025 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | |||
| rs27664299 MPD | dbSNP | MGI SNP Detail | Chr2:180340159 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | C | C | G | C | G | C | C/G | |||||||
| rs27664298 MPD | dbSNP | MGI SNP Detail | Chr2:180340203 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664297 MPD | dbSNP | MGI SNP Detail | Chr2:180340230 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||
| rs27664296 MPD | dbSNP | MGI SNP Detail | Chr2:180340307 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27664295 MPD | dbSNP | MGI SNP Detail | Chr2:180340939 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||
| rs27664294 MPD | dbSNP | MGI SNP Detail | Chr2:180341293 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | A | G | A/G | ||||
| rs27664293 MPD | dbSNP | MGI SNP Detail | Chr2:180341615 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||
| rs27664292 MPD | dbSNP | MGI SNP Detail | Chr2:180341675 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | G | A | A/G | |||
| rs27664291 MPD | dbSNP | MGI SNP Detail | Chr2:180341676 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C | C/G | ||||
| rs27664290 MPD | dbSNP | MGI SNP Detail | Chr2:180341686 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | A | T | T | T | A | T | A/T | ||||
| rs27664289 MPD | dbSNP | MGI SNP Detail | Chr2:180341723 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A/C | |||
| rs27664288 MPD | dbSNP | MGI SNP Detail | Chr2:180341732 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | T | C | C/T | ||||
| rs27664287 MPD | dbSNP | MGI SNP Detail | Chr2:180341857 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||
| rs6392121 MPD | dbSNP | MGI SNP Detail | Chr2:180342322 | f | Col9a3 : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs27664286 MPD | dbSNP | MGI SNP Detail | Chr2:180342457 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G/T | |||
| rs6394428 MPD | dbSNP | MGI SNP Detail | Chr2:180342734 | f | Col9a3 : Intron | 2 | SNP | T | T | T | T | T | T | G | G | T | T | G | T | T | G | T | G | T | G/T | |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27664285 MPD | dbSNP | MGI SNP Detail | Chr2:180342945 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | T | C | C | C | C | T | C | C/T | ||||
| rs27664284 MPD | dbSNP | MGI SNP Detail | Chr2:180343002 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | C | G | C/G | |||
| rs27664283 MPD | dbSNP | MGI SNP Detail | Chr2:180343092 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||
| rs27664282 MPD | dbSNP | MGI SNP Detail | Chr2:180343202 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664281 MPD | dbSNP | MGI SNP Detail | Chr2:180343516 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | C | T | C | T | C/T | |||
| rs27664280 MPD | dbSNP | MGI SNP Detail | Chr2:180343614 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | A | C | A/C | ||||
| rs27664279 MPD | dbSNP | MGI SNP Detail | Chr2:180344332 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | T | A | A | T | A | A | A | A | T | A | A/T | |||
| rs27664278 MPD | dbSNP | MGI SNP Detail | Chr2:180344437 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||
| rs27664277 MPD | dbSNP | MGI SNP Detail | Chr2:180344963 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||
| rs27664276 MPD | dbSNP | MGI SNP Detail | Chr2:180345005 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664275 MPD | dbSNP | MGI SNP Detail | Chr2:180345144 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||
| rs27664274 MPD | dbSNP | MGI SNP Detail | Chr2:180345177 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | C | G | C/G | |||
| rs27664273 MPD | dbSNP | MGI SNP Detail | Chr2:180345250 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | C | G | C/G | |||
| rs27664272 MPD | dbSNP | MGI SNP Detail | Chr2:180345514 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | T | A | A | T | A | A | A | T | A | A/T | ||||
| rs27664271 MPD | dbSNP | MGI SNP Detail | Chr2:180345603 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664270 MPD | dbSNP | MGI SNP Detail | Chr2:180345621 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | A | G | A/G | |||||||
| rs27664269 MPD | dbSNP | MGI SNP Detail | Chr2:180345638 | f | Col9a3 : Intron | 1 | SNP | C | C | C | T | C | C | C | C | T | C | C/T | ||||||||
| rs27664268 MPD | dbSNP | MGI SNP Detail | Chr2:180345670 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||
| rs27664267 MPD | dbSNP | MGI SNP Detail | Chr2:180345711 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | G | T | G | G/T | |||
| rs27664266 MPD | dbSNP | MGI SNP Detail | Chr2:180345759 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27664265 MPD | dbSNP | MGI SNP Detail | Chr2:180345991 | f | Col9a3 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | |||
| rs27664264 MPD | dbSNP | MGI SNP Detail | Chr2:180346090 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664263 MPD | dbSNP | MGI SNP Detail | Chr2:180346118 | f | Col9a3 : Intron | 1 | SNP | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||||
| rs27664262 MPD | dbSNP | MGI SNP Detail | Chr2:180346302 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||
| rs27664261 MPD | dbSNP | MGI SNP Detail | Chr2:180346586 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C | T | C/T | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27664260 MPD | dbSNP | MGI SNP Detail | Chr2:180346785 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C/T | |||
| rs27664259 MPD | dbSNP | MGI SNP Detail | Chr2:180346978 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||
| rs6222838 MPD | dbSNP | MGI SNP Detail | Chr2:180347703 | f | Col9a3 : Intron | 1 | SNP | A | C | A/C | ||||||||||||||||
| rs6222854 MPD | dbSNP | MGI SNP Detail | Chr2:180347711 | f | Col9a3 : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs6222858 MPD | dbSNP | MGI SNP Detail | Chr2:180347716 | f | Col9a3 : Intron | 2 | SNP | A | A | A | A | A | A | G | G | A | A | A | A | A | A | G | A | A/G | ||
| rs6223411 MPD | dbSNP | MGI SNP Detail | Chr2:180347807 | f | Col9a3 : Intron | 2 | SNP | T | T | T | T | T | T | C | C | T | T | C | T | T | C | T | C | T | C/T | |
| rs6386861 MPD | dbSNP | MGI SNP Detail | Chr2:180347928 | f | Col9a3 : Intron | 2 | SNP | C | C | C | C | C | C | T | T | C | C | T | C | C | C | C | T | C | C/T | |
| rs6387283 MPD | dbSNP | MGI SNP Detail | Chr2:180347983 | f | Col9a3 : Intron | 2 | SNP | T | T | T | T | T | T | C | C | T | T | C | T | T | T | C | T | C/T | ||
| rs6387391 MPD | dbSNP | MGI SNP Detail | Chr2:180348050 | f | Col9a3 : Intron | 2 | SNP | T | T | T | T | T | T | C | C | T | T | C | T | T | T | C | T | C/T | ||
| rs6387806 MPD | dbSNP | MGI SNP Detail | Chr2:180348086 | f | Col9a3 : Intron | 2 | SNP | T | T | T | T | T | T | C | C | T | T | C | T | T | C | T | C | T | C/T | |
| rs6387927 MPD | dbSNP | MGI SNP Detail | Chr2:180348144 | f | Col9a3 : Intron | 1 | SNP | C | A | A/C | ||||||||||||||||
| rs27664258 MPD | dbSNP | MGI SNP Detail | Chr2:180348755 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664257 MPD | dbSNP | MGI SNP Detail | Chr2:180348923 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27664256 MPD | dbSNP | MGI SNP Detail | Chr2:180349122 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664255 MPD | dbSNP | MGI SNP Detail | Chr2:180349254 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | T | C | C/T | ||||
| rs27664254 MPD | dbSNP | MGI SNP Detail | Chr2:180349837 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | G | C | C | C | G | C | C/G | ||||
| rs27664253 MPD | dbSNP | MGI SNP Detail | Chr2:180349959 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | C | A | A | C | A | A | A | A | C | A | A/C | |||
| rs27664252 MPD | dbSNP | MGI SNP Detail | Chr2:180350048 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | G | A | A/G | ||||
| rs27664251 MPD | dbSNP | MGI SNP Detail | Chr2:180350347 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C | C/T | |||||||
| rs27664250 MPD | dbSNP | MGI SNP Detail | Chr2:180350448 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | G | A | A/G | ||||
| rs27664249 MPD | dbSNP | MGI SNP Detail | Chr2:180350552 | f | Col9a3 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | G | T | T | G | T | T | G | T | G | T | G/T | |||
| rs27664248 MPD | dbSNP | MGI SNP Detail | Chr2:180351067 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | G | A | A/G | ||||
| rs27664247 MPD | dbSNP | MGI SNP Detail | Chr2:180351453 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | |||
| rs27664246 MPD | dbSNP | MGI SNP Detail | Chr2:180351588 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T | |||
| rs27664245 MPD | dbSNP | MGI SNP Detail | Chr2:180351649 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | A | C | A/C | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27664244 MPD | dbSNP | MGI SNP Detail | Chr2:180351686 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | A | G | A/G | |||||
| rs27664243 MPD | dbSNP | MGI SNP Detail | Chr2:180351805 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | A | T | T | T | T | A | T | A/T | |||
| rs27664242 MPD | dbSNP | MGI SNP Detail | Chr2:180352878 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | T | C | C/T | ||||
| rs27664241 MPD | dbSNP | MGI SNP Detail | Chr2:180352971 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | A | G | A | G | A/G | |||
| rs27664240 MPD | dbSNP | MGI SNP Detail | Chr2:180352987 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C | T | C/T | ||||
| rs27664239 MPD | dbSNP | MGI SNP Detail | Chr2:180353119 | f | Col9a3 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||
| rs27664238 MPD | dbSNP | MGI SNP Detail | Chr2:180353380 | f | Col9a3 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | T | C | C/T | ||||
| rs33460278 MPD | dbSNP | MGI SNP Detail | Chr2:180353518 | f | Col9a3 : Intron | 1 | SNP | A | C | A | A/C | |||||||||||||||
| rs33646864 MPD | dbSNP | MGI SNP Detail | Chr2:180353781 | f | Col9a3 : Intron | 1 | SNP | A | A | G | A | A/G | ||||||||||||||
| rs27664237 MPD | dbSNP | MGI SNP Detail | Chr2:180354149 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | |||
| rs27664236 MPD | dbSNP | MGI SNP Detail | Chr2:180354355 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | G | A | A | G | A | A | A | A | G | A | A/G | ||||
| rs27664235 MPD | dbSNP | MGI SNP Detail | Chr2:180354530 | f | Col9a3 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs27664234 MPD | dbSNP | MGI SNP Detail | Chr2:180354574 | f | Col9a3 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | G | A | A/G | ||||||||
| rs27664233 MPD | dbSNP | MGI SNP Detail | Chr2:180355047 | f | Col9a3 : Intron Tcfl5 : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||
| rs27664232 MPD | dbSNP | MGI SNP Detail | Chr2:180355085 | f | Col9a3 : Intron Tcfl5 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||
| rs27664231 MPD | dbSNP | MGI SNP Detail | Chr2:180355144 | f | Col9a3 : Intron Tcfl5 : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | G | A | A/G | ||||
| rs13465703 MPD | dbSNP | MGI SNP Detail | Chr2:180356172 | f | Col9a3 : mRNA-UTR Tcfl5 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
||
|
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support. |
last database update 05/08/2013 MGI 5.13 |
|
|
|
||
Analysis Tools