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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
T brachyury MGI:98472 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs47475760 MPD | dbSNP | MGI SNP Detail | Chr17:8625401 | f | T : Locus-Region | 1 | SNP | A | A | A | A | A | G | A | A | A | G | A | A | G | A | A/G | ||||
| rs46744537 MPD | dbSNP | MGI SNP Detail | Chr17:8625534 | f | T : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | T | C | T | T | C | T | C/T | ||||
| rs46652427 MPD | dbSNP | MGI SNP Detail | Chr17:8625605 | f | T : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C/T | ||||
| rs50985819 MPD | dbSNP | MGI SNP Detail | Chr17:8625620 | f | T : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | A | G | G | A | G | A/G | ||||
| rs46516908 MPD | dbSNP | MGI SNP Detail | Chr17:8625700 | f | T : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A/G | ||||
| rs46174644 MPD | dbSNP | MGI SNP Detail | Chr17:8625755 | f | T : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | ||||
| rs48100197 MPD | dbSNP | MGI SNP Detail | Chr17:8626162 | f | T : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | ||||
| rs46453495 MPD | dbSNP | MGI SNP Detail | Chr17:8626170 | f | T : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A/T | ||||
| rs49508277 MPD | dbSNP | MGI SNP Detail | Chr17:8627168 | f | T : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | ||||
| rs49493340 MPD | dbSNP | MGI SNP Detail | Chr17:8627665 | f | T : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A/G | |||||
| rs50445732 MPD | dbSNP | MGI SNP Detail | Chr17:8627701 | f | T : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||||
| rs49430179 MPD | dbSNP | MGI SNP Detail | Chr17:8627923 | f | T : Intron | 1 | SNP | A | A | A | T | A | A | A | A/T | |||||||||||
| rs45998903 MPD | dbSNP | MGI SNP Detail | Chr17:8627958 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||
| rs49777590 MPD | dbSNP | MGI SNP Detail | Chr17:8628137 | f | T : Coding-Synonymous | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G/T | ||||
| rs51284438 MPD | dbSNP | MGI SNP Detail | Chr17:8628266 | f | T : Coding-Synonymous | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G/T | ||||
| rs50140458 MPD | dbSNP | MGI SNP Detail | Chr17:8628380 | f | T : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | T | A | A/T | ||||
| rs29504049 MPD | dbSNP | MGI SNP Detail | Chr17:8628517 | f | T : Intron | 2 | SNP | T | T | C | C | C | C | C | C | C | C | C | C | C | C/T | |||||
| rs49109066 MPD | dbSNP | MGI SNP Detail | Chr17:8628518 | f | T : Intron | 1 | SNP | C | C | C | C | G | C | C | C | G | C | C | C | C/G | ||||||
| rs48804697 MPD | dbSNP | MGI SNP Detail | Chr17:8628542 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | ||||
| rs47819927 MPD | dbSNP | MGI SNP Detail | Chr17:8628585 | f | T : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | A | G | G | A | G | A/G | ||||
| rs50811005 MPD | dbSNP | MGI SNP Detail | Chr17:8628617 | f | T : Intron | 1 | SNP | G | G | G | G | G | C | G | G | G | G | G | G | G | G | C/G | ||||
| rs47602716 MPD | dbSNP | MGI SNP Detail | Chr17:8628751 | f | T : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||||
| rs48532747 MPD | dbSNP | MGI SNP Detail | Chr17:8628775 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | A | G | G | G | A/G | |||||
| rs51398555 MPD | dbSNP | MGI SNP Detail | Chr17:8629281 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | A | G | G | A | G | A/G | ||||
| rs49442459 MPD | dbSNP | MGI SNP Detail | Chr17:8629884 | f | T : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs6170463 MPD | dbSNP | MGI SNP Detail | Chr17:8630138 | f | T : Intron | 1 | SNP | A | C | A/C | ||||||||||||||||
| rs6170558 MPD | dbSNP | MGI SNP Detail | Chr17:8630188 | f | T : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs6171618 MPD | dbSNP | MGI SNP Detail | Chr17:8630371 | f | T : Intron | 1 | SNP | C | T | C/T | ||||||||||||||||
| rs6172106 MPD | dbSNP | MGI SNP Detail | Chr17:8630444 | f | T : Intron | 2 | SNP | G | G | G | G | G | G | A | A | G | G | G | A | G | G | A | G | A/G | ||
| rs6172682 MPD | dbSNP | MGI SNP Detail | Chr17:8630538 | f | T : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs6172701 MPD | dbSNP | MGI SNP Detail | Chr17:8630549 | f | T : Intron | 2 | SNP | G | G | G | G | G | G | A | A | G | G | G | A | G | G | G | A/G | |||
| rs6172774 MPD | dbSNP | MGI SNP Detail | Chr17:8630588 | f | T : Intron | 2 | SNP | C | C | C | C | C | C | C | G | C | C | C | C | C | C | G | C | C/G | ||
| rs47041777 MPD | dbSNP | MGI SNP Detail | Chr17:8630736 | f | T : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | G | T | T | G/T | ||||||
| rs49469751 MPD | dbSNP | MGI SNP Detail | Chr17:8630767 | f | T : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | ||||
| rs46355305 MPD | dbSNP | MGI SNP Detail | Chr17:8631123 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | A | G | G | A | G | A/G | ||||
| rs47475799 MPD | dbSNP | MGI SNP Detail | Chr17:8631320 | f | T : Intron | 1 | SNP | C | T | C | T | T | T | T | T | C | T | C | C/T | |||||||
| rs48907684 MPD | dbSNP | MGI SNP Detail | Chr17:8631398 | f | T : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | A/G | ||||
| rs49746991 MPD | dbSNP | MGI SNP Detail | Chr17:8631901 | f | T : Intron | 1 | SNP | A | A | A | A | A | A | A | A | T | A | A | T | A | A/T | |||||
| rs49427979 MPD | dbSNP | MGI SNP Detail | Chr17:8632779 | f | T : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | T | C | T | T | C | T | C/T | ||||
| rs50608810 MPD | dbSNP | MGI SNP Detail | Chr17:8633014 | f | T : Intron | 1 | SNP | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A/C | ||||
| rs49645468 MPD | dbSNP | MGI SNP Detail | Chr17:8633193 | f | T : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | ||||
| rs51800558 MPD | dbSNP | MGI SNP Detail | Chr17:8633253 | f | T : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | ||||
| rs45746278 MPD | dbSNP | MGI SNP Detail | Chr17:8633512 | f | T : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | ||||
| rs50609470 MPD | dbSNP | MGI SNP Detail | Chr17:8633515 | f | T : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | A | T | T | A | T | A/T | ||||
| rs50426837 MPD | dbSNP | MGI SNP Detail | Chr17:8633882 | f | T : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | ||||
| rs51354830 MPD | dbSNP | MGI SNP Detail | Chr17:8633989 | f | T : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | G/T | |||
| rs50625444 MPD | dbSNP | MGI SNP Detail | Chr17:8634085 | f | T : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs45739998 MPD | dbSNP | MGI SNP Detail | Chr17:8634289 | f | T : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | T | C | C | T | C | C/T | |||
| rs33684691 MPD | dbSNP | MGI SNP Detail | Chr17:8634584 | f | T : Coding-Synonymous | 2 | SNP | A | A | G | G | G | G | G | G | G | G | A | G | A | G | G | A | G | A/G | |
| rs50569488 MPD | dbSNP | MGI SNP Detail | Chr17:8634728 | f | T : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | C | T | C | T | T | C | T | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs51063100 MPD | dbSNP | MGI SNP Detail | Chr17:8634989 | f | T : mRNA-UTR | 1 | SNP | T | T | T | T | T | C | T | T | C | T | C | T | T | C | T | C/T | |||
| rs48237184 MPD | dbSNP | MGI SNP Detail | Chr17:8635276 | f | T : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | C | T | C | T | T | C | T | C/T | |||
| rs47841648 MPD | dbSNP | MGI SNP Detail | Chr17:8635386 | f | T : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | A | G | A | G | G | A | G | A/G | |||
| rs46431353 MPD | dbSNP | MGI SNP Detail | Chr17:8635665 | f | T : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | A | G | G | A | G | A/G | |||
| rs47938750 MPD | dbSNP | MGI SNP Detail | Chr17:8635721 | f | T : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C | T | C | T | T | C | T | C/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/22/2013 MGI 5.13 |
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