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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Shh
sonic hedgehog
MGI:98297

35 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs242395704
MPD | dbSNP | MGI SNP Detail
Chr5:28455065fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 1750 bp downstream of
1SNP        AA  A
rs33674412
MPD | dbSNP | MGI SNP Detail
Chr5:28455185fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 1630 bp downstream of
3SNPAAA  G  AAA A/G
rs108198781
MPD | dbSNP | MGI SNP Detail
Chr5:28455205fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 1610 bp downstream of
1SNP  G       C C/G
rs108778547
MPD | dbSNP | MGI SNP Detail
Chr5:28455316fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 1499 bp downstream of
1SNP TT       C C/T
rs108667620
MPD | dbSNP | MGI SNP Detail
Chr5:28455436fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 1379 bp downstream of
1SNP A        T A/T
rs29729942
MPD | dbSNP | MGI SNP Detail
Chr5:28456230fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 585 bp downstream of
1SNP TC  C      C/T
rs33485416
MPD | dbSNP | MGI SNP Detail
Chr5:28456231fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : 584 bp downstream of
1SNP GA  A      A/G
rs33068028
MPD | dbSNP | MGI SNP Detail
Chr5:28456528fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
2SNP TC  CC     C/T
rs29682823
MPD | dbSNP | MGI SNP Detail
Chr5:28456745fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNPGGG  AA GG  A/G
rs33133952
MPD | dbSNP | MGI SNP Detail
Chr5:28458658fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
2SNP GC  GG CC  C/G
rs33181672
MPD | dbSNP | MGI SNP Detail
Chr5:28458898fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
2SNP TG  TT GT  G/T
rs50197484
MPD | dbSNP | MGI SNP Detail
Chr5:28460553fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP A    G     A/G
rs48089243
MPD | dbSNP | MGI SNP Detail
Chr5:28460637fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP AG   G     A/G
rs33541793
MPD | dbSNP | MGI SNP Detail
Chr5:28461148fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNP  C  TT CC  C/T
rs48165522
MPD | dbSNP | MGI SNP Detail
Chr5:28461904fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP        CC  C
rs33746193
MPD | dbSNP | MGI SNP Detail
Chr5:28462388fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNP AA  GG AA  A/G
rs33214222
MPD | dbSNP | MGI SNP Detail
Chr5:28462410fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNP TT  AA TT  A/T
rs33285952
MPD | dbSNP | MGI SNP Detail
Chr5:28463121fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
4SNP GAA GGGAA  A/G
rs33560337
MPD | dbSNP | MGI SNP Detail
Chr5:28463291fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
2SNP TG  GG     G/T
rs33259009
MPD | dbSNP | MGI SNP Detail
Chr5:28463499fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNP CC  TT CC  C/T
rs29727180
MPD | dbSNP | MGI SNP Detail
Chr5:28463548fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNPAAA  GG AA  A/G
rs33735948
MPD | dbSNP | MGI SNP Detail
Chr5:28464029fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
2SNPAAG  AA GG  A/G
rs214754934
MPD | dbSNP | MGI SNP Detail
Chr5:28464207fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP        TT  T
rs234473356
MPD | dbSNP | MGI SNP Detail
Chr5:28464716fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP        TC  C/T
rs261352797
MPD | dbSNP | MGI SNP Detail
Chr5:28464804fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP        CC  C
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs33682898
MPD | dbSNP | MGI SNP Detail
Chr5:28465239f9530036O11Rik : Locus-Region
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
3SNP  G  A  GG  A/G
rs37496005
MPD | dbSNP | MGI SNP Detail
Chr5:28466035f9530036O11Rik : Locus-Region
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Shh : Intron
1SNP   AT  A   AA/T
rs51528487
MPD | dbSNP | MGI SNP Detail
Chr5:28467987f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
2SNP  C     CC  C
rs29676307
MPD | dbSNP | MGI SNP Detail
Chr5:28468150f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP CC  T  CC  C/T
rs33455132
MPD | dbSNP | MGI SNP Detail
Chr5:28468481f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP AA  GG AA  A/G
rs36386019
MPD | dbSNP | MGI SNP Detail
Chr5:28468594f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
1SNP   C   T   CC/T
rs29562835
MPD | dbSNP | MGI SNP Detail
Chr5:28468719f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP CC   A CC  A/C
rs33112153
MPD | dbSNP | MGI SNP Detail
Chr5:28468781f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP GG  AA GG  A/G
rs29530423
MPD | dbSNP | MGI SNP Detail
Chr5:28468909f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP CC  TT CC  C/T
rs29733217
MPD | dbSNP | MGI SNP Detail
Chr5:28468919f9530036O11Rik : Intron
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Gm26894 : within coordinates of
Shh : Locus-Region
3SNP TT  CC TT  C/T

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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory