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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Prf1 perforin 1 (pore forming protein) MGI:97551 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs47638529 MPD | dbSNP | MGI SNP Detail | Chr10:60759522 | f | Prf1 : Locus-Region | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||
| rs46241859 MPD | dbSNP | MGI SNP Detail | Chr10:60759751 | f | Prf1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||||
| rs50496431 MPD | dbSNP | MGI SNP Detail | Chr10:60759779 | f | Prf1 : Locus-Region | 1 | SNP | T | T | T | C | T | T | T | T | T | T | T | T | C/T | ||||||||
| rs8242303 MPD | dbSNP | MGI SNP Detail | Chr10:60759995 | f | Prf1 : Locus-Region | 2 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||||
| rs8242304 MPD | dbSNP | MGI SNP Detail | Chr10:60760058 | f | Prf1 : Locus-Region | 1 | IN-DEL | C | C | - | C | -/C | ||||||||||||||||
| rs8242305 MPD | dbSNP | MGI SNP Detail | Chr10:60760088 | f | Prf1 : Locus-Region | 2 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | ||||
| rs8242306 MPD | dbSNP | MGI SNP Detail | Chr10:60760128 | f | Prf1 : Locus-Region | 2 | SNP | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | T | C | C/T | |||
| rs49817503 MPD | dbSNP | MGI SNP Detail | Chr10:60760294 | f | Prf1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | |||||
| rs45653792 MPD | dbSNP | MGI SNP Detail | Chr10:60760414 | f | Prf1 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||||
| rs8236824 MPD | dbSNP | MGI SNP Detail | Chr10:60760877 | f | Prf1 : Intron | 2 | SNP | C | C | C | C | C | T | C | C | C | C | C/T | ||||||||||
| rs50605669 MPD | dbSNP | MGI SNP Detail | Chr10:60761180 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G/T | |||||
| rs8244714 MPD | dbSNP | MGI SNP Detail | Chr10:60761337 | r | Prf1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | G/T | ||||||||||
| rs8244715 MPD | dbSNP | MGI SNP Detail | Chr10:60761741 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | A/G | ||||||||||
| rs48344631 MPD | dbSNP | MGI SNP Detail | Chr10:60761741 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||
| rs8244716 MPD | dbSNP | MGI SNP Detail | Chr10:60761772 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | A/G | ||||||||||
| rs48623982 MPD | dbSNP | MGI SNP Detail | Chr10:60761772 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||
| rs8244717 MPD | dbSNP | MGI SNP Detail | Chr10:60761822 | f | Prf1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A/G | ||||||||||
| rs48267736 MPD | dbSNP | MGI SNP Detail | Chr10:60761822 | f | Prf1 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | G | A | A | A | A | G | G | A/G | |||||
| rs8244718 MPD | dbSNP | MGI SNP Detail | Chr10:60761852 | f | Prf1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | G/T | ||||||||||
| rs50441007 MPD | dbSNP | MGI SNP Detail | Chr10:60761852 | f | Prf1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | T | T | T | G | G/T | |||||
| rs8244719 MPD | dbSNP | MGI SNP Detail | Chr10:60761853 | f | Prf1 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | T | T | A/T | ||||||||||
| rs51354870 MPD | dbSNP | MGI SNP Detail | Chr10:60761883 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | C/G | |||||
| rs8244720 MPD | dbSNP | MGI SNP Detail | Chr10:60761988 | f | Prf1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C/T | ||||||||||
| rs8244721 MPD | dbSNP | MGI SNP Detail | Chr10:60762020 | f | Prf1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C/T | ||||||||||
| rs8244722 MPD | dbSNP | MGI SNP Detail | Chr10:60762030 | f | Prf1 : Intron | 1 | IN-DEL | G | G | G | G | G | - | G | G | G | G | -/G | ||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs8244723 MPD | dbSNP | MGI SNP Detail | Chr10:60762031 | f | Prf1 : Intron | 1 | IN-DEL | A | A | A | A | A | - | A | A | A | A | -/A | ||||||||||
| rs8244724 MPD | dbSNP | MGI SNP Detail | Chr10:60762032 | f | Prf1 : Intron | 1 | IN-DEL | C | C | C | C | C | - | C | C | C | C | -/C | ||||||||||
| rs8244725 MPD | dbSNP | MGI SNP Detail | Chr10:60762077 | f | Prf1 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | A/G | |||||||||||
| rs8244726 MPD | dbSNP | MGI SNP Detail | Chr10:60762087 | f | Prf1 : Intron | 1 | IN-DEL | A | A | A | A | A | - | A | A | A | A | -/A | ||||||||||
| rs8244727 MPD | dbSNP | MGI SNP Detail | Chr10:60762161 | f | Prf1 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | A | A/G | |||||||||||
| rs8244728 MPD | dbSNP | MGI SNP Detail | Chr10:60762164 | f | Prf1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C/T | ||||||||||||
| rs8244729 MPD | dbSNP | MGI SNP Detail | Chr10:60762227 | f | Prf1 : Intron | 1 | SNP | T | T | T | A | A | T | T | T | T | A/T | |||||||||||
| rs49459052 MPD | dbSNP | MGI SNP Detail | Chr10:60762436 | f | Prf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | A/C | |||||
| rs47742442 MPD | dbSNP | MGI SNP Detail | Chr10:60762616 | f | Prf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | |||||
| rs8244730 MPD | dbSNP | MGI SNP Detail | Chr10:60762705 | f | Prf1 : Coding-NonSynonymous | 2 | SNP | G | G | G | G | G | G | G | C | G | G | C | G | G | G | G | G | G | G | C | C | C/G |
| rs8244731 MPD | dbSNP | MGI SNP Detail | Chr10:60765593 | f | Prf1 : Coding-NonSynonymous | 1 | SNP | A | A | A | A | G | A | A | A/G | |||||||||||||
| rs8244732 MPD | dbSNP | MGI SNP Detail | Chr10:60765636 | f | Prf1 : Coding-Synonymous | 1 | SNP | G | G | G | G | A | G | G | G | A/G | ||||||||||||
| rs8244733 MPD | dbSNP | MGI SNP Detail | Chr10:60765711 | f | Prf1 : Coding-Synonymous | 1 | SNP | G | G | G | G | G | C | G | G | G | G | C/G | ||||||||||
| rs8244734 MPD | dbSNP | MGI SNP Detail | Chr10:60765748 | f | Prf1 : Coding-NonSynonymous | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A/G | ||||||||||
| rs8244735 MPD | dbSNP | MGI SNP Detail | Chr10:60765750 | f | Prf1 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | T | T | T | C/T | ||||||||||
| rs8244736 MPD | dbSNP | MGI SNP Detail | Chr10:60765927 | f | Prf1 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C/G | ||||||||||
| rs45645594 MPD | dbSNP | MGI SNP Detail | Chr10:60766189 | f | Prf1 : Coding-NonSynonymous | 1 | SNP | C | C | C | C | C | A | C | C | C | C | A/C | ||||||||||
| rs8244737 MPD | dbSNP | MGI SNP Detail | Chr10:60766239 | f | Prf1 : Coding-Synonymous | 1 | SNP | A | A | C | A | A/C | ||||||||||||||||
| rs8244738 MPD | dbSNP | MGI SNP Detail | Chr10:60766276 | f | Prf1 : Coding-NonSynonymous | 1 | SNP | C | C | T | C | C/T | ||||||||||||||||
| rs8244739 MPD | dbSNP | MGI SNP Detail | Chr10:60766706 | f | Prf1 : mRNA-UTR | 1 | IN-DEL | C | - | C | -/C | |||||||||||||||||
| rs8244740 MPD | dbSNP | MGI SNP Detail | Chr10:60766707 | f | Prf1 : mRNA-UTR | 1 | IN-DEL | C | - | C | - | -/C | ||||||||||||||||
| rs8244741 MPD | dbSNP | MGI SNP Detail | Chr10:60766879 | f | Prf1 : mRNA-UTR | 1 | IN-DEL | - | - | - | G | - | - | - | - | -/G | ||||||||||||
| rs8244742 MPD | dbSNP | MGI SNP Detail | Chr10:60766920 | f | Prf1 : mRNA-UTR | 1 | SNP | A | A | A | G | A | A | A | A | A/G | ||||||||||||
| rs8244743 MPD | dbSNP | MGI SNP Detail | Chr10:60766965 | f | Prf1 : mRNA-UTR | 1 | SNP | A | A | A | C | A | A | A | A | A/C | ||||||||||||
| rs8244744 MPD | dbSNP | MGI SNP Detail | Chr10:60766988 | f | Prf1 : mRNA-UTR | 1 | SNP | A | A | A | C | A | A | A | A | A/C | ||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs8244745 MPD | dbSNP | MGI SNP Detail | Chr10:60767122 | f | Prf1 : Locus-Region | 1 | SNP | C | C | C | T | C | C | C | C | C/T | ||||||||||||
| rs8244746 MPD | dbSNP | MGI SNP Detail | Chr10:60767214 | f | Prf1 : Locus-Region | 1 | SNP | G | T | G/T | ||||||||||||||||||
| rs8244747 MPD | dbSNP | MGI SNP Detail | Chr10:60767229 | f | Prf1 : Locus-Region | 1 | SNP | A | G | A | A | G | G | A/G | ||||||||||||||
| rs8244748 MPD | dbSNP | MGI SNP Detail | Chr10:60767253 | f | Prf1 : Locus-Region | 1 | SNP | A | G | G | A/G | |||||||||||||||||
| rs8244749 MPD | dbSNP | MGI SNP Detail | Chr10:60767292 | f | Prf1 : Locus-Region | 1 | SNP | T | G | T | G/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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