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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Pax1 paired box gene 1 MGI:97485 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs33737003 MPD | dbSNP | MGI SNP Detail | Chr2:147189160 | f | Pax1 : Locus-Region | 1 | SNP | T | C | C | C/T | ||||||||||||||
| rs29573512 MPD | dbSNP | MGI SNP Detail | Chr2:147189171 | f | Pax1 : Locus-Region | 1 | SNP | C | T | T | C/T | ||||||||||||||
| rs33275121 MPD | dbSNP | MGI SNP Detail | Chr2:147191884 | f | Pax1 : Coding-Synonymous | 1 | SNP | C | T | C | C | C/T | |||||||||||||
| rs27294657 MPD | dbSNP | MGI SNP Detail | Chr2:147193187 | f | Pax1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | ||||
| rs29673543 MPD | dbSNP | MGI SNP Detail | Chr2:147193223 | f | Pax1 : Intron | 1 | SNP | A | C | A | A | A/C | |||||||||||||
| rs33146224 MPD | dbSNP | MGI SNP Detail | Chr2:147193519 | f | Pax1 : Intron | 1 | SNP | C | T | C | C/T | ||||||||||||||
| rs27294656 MPD | dbSNP | MGI SNP Detail | Chr2:147193609 | f | Pax1 : Intron | 1 | SNP | G | A | A | A | G | G | A | A | A | G | G | A | A/G | |||||
| rs27294655 MPD | dbSNP | MGI SNP Detail | Chr2:147194096 | f | Pax1 : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | G/T | ||
| rs32856213 MPD | dbSNP | MGI SNP Detail | Chr2:147194417 | f | Pax1 : Intron | 1 | SNP | G | T | G/T | |||||||||||||||
| rs33209669 MPD | dbSNP | MGI SNP Detail | Chr2:147194419 | f | Pax1 : Intron | 1 | SNP | G | T | G/T | |||||||||||||||
| rs27294654 MPD | dbSNP | MGI SNP Detail | Chr2:147195194 | f | Pax1 : Intron | 1 | SNP | G | A | G | A | A | A | G | A | A | A | G | G | G | A | A/G | |||
| rs27294653 MPD | dbSNP | MGI SNP Detail | Chr2:147195468 | f | Pax1 : Intron | 1 | SNP | A | G | A | G | G | G | A | G | A | G | G | A | A | A | G | A/G | ||
| rs27294652 MPD | dbSNP | MGI SNP Detail | Chr2:147195611 | f | Pax1 : Intron | 1 | SNP | C | C | T | T | C | T | C | T | T | C | C | C | T | C/T | ||||
| rs27294651 MPD | dbSNP | MGI SNP Detail | Chr2:147195645 | f | Pax1 : Intron | 1 | SNP | C | T | C | T | T | C | C | T | C | T | T | C | C | C | T | C/T | ||
| rs27294650 MPD | dbSNP | MGI SNP Detail | Chr2:147195719 | f | Pax1 : Intron | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | C/T | |||||
| rs27294649 MPD | dbSNP | MGI SNP Detail | Chr2:147195885 | f | Pax1 : Intron | 1 | SNP | G | A | G | A | A | G | G | A | G | A | A | G | G | G | A | A/G | ||
| rs27294648 MPD | dbSNP | MGI SNP Detail | Chr2:147195900 | f | Pax1 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G/T | |||
| rs27294647 MPD | dbSNP | MGI SNP Detail | Chr2:147195987 | f | Pax1 : Intron | 1 | SNP | C | A | A | A | A | A | A | A | C | C | C | A | A/C | |||||
| rs27294646 MPD | dbSNP | MGI SNP Detail | Chr2:147196046 | f | Pax1 : Intron | 1 | SNP | A | G | A | G | G | G | A | G | A | G | G | A | A | A | G | A/G | ||
| rs27294645 MPD | dbSNP | MGI SNP Detail | Chr2:147196106 | f | Pax1 : Intron | 1 | SNP | C | G | C | G | G | G | C | G | G | G | C | C | C | G | C/G | |||
| rs27294644 MPD | dbSNP | MGI SNP Detail | Chr2:147196127 | f | Pax1 : Intron | 1 | SNP | G | A | G | A | A | G | G | A | G | A | A | G | G | G | A | A/G | ||
| rs27294643 MPD | dbSNP | MGI SNP Detail | Chr2:147196474 | f | Pax1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | |||
| rs27294642 MPD | dbSNP | MGI SNP Detail | Chr2:147196643 | f | Pax1 : Intron | 1 | SNP | C | G | G | G | G | C | G | G | G | C | C | C | G | C/G | ||||
| rs27294641 MPD | dbSNP | MGI SNP Detail | Chr2:147196666 | f | Pax1 : Intron | 1 | SNP | C | T | T | C | C | T | T | T | C | C | C | T | C/T | |||||
| rs27294640 MPD | dbSNP | MGI SNP Detail | Chr2:147196948 | f | Pax1 : Intron | 1 | SNP | A | A | A | C | A | A | C | A | A/C | |||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27294639 MPD | dbSNP | MGI SNP Detail | Chr2:147197006 | f | Pax1 : Intron | 1 | SNP | A | G | G | A | G | A | A | A/G | ||||||||||
| rs27294638 MPD | dbSNP | MGI SNP Detail | Chr2:147197115 | f | Pax1 : Intron | 1 | SNP | A | G | A | A | A/G | |||||||||||||
| rs27294637 MPD | dbSNP | MGI SNP Detail | Chr2:147197180 | f | Pax1 : Intron | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | T | G | G/T | ||||
| rs27294636 MPD | dbSNP | MGI SNP Detail | Chr2:147197208 | f | Pax1 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | C/T | ||
| rs27294635 MPD | dbSNP | MGI SNP Detail | Chr2:147197306 | f | Pax1 : Intron | 1 | SNP | T | C | C | C | C | C | C | C | T | T | C | C/T | ||||||
| rs27294634 MPD | dbSNP | MGI SNP Detail | Chr2:147197687 | f | Pax1 : Intron | 1 | SNP | A | G | A | G | G | A | A | G | G | G | A | A | A | G | A/G | |||
| rs27294633 MPD | dbSNP | MGI SNP Detail | Chr2:147197728 | f | Pax1 : Intron | 1 | SNP | A | G | G | A | A | G | G | A | A/G | |||||||||
| rs27294632 MPD | dbSNP | MGI SNP Detail | Chr2:147197735 | f | Pax1 : Intron | 1 | SNP | C | C | C | C | A | C | A/C | |||||||||||
| rs27294631 MPD | dbSNP | MGI SNP Detail | Chr2:147197773 | f | Pax1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||||
| rs27294630 MPD | dbSNP | MGI SNP Detail | Chr2:147197781 | f | Pax1 : Intron | 1 | SNP | A | C | C | C | A | C | C | C | A | C | A/C | |||||||
| rs27294629 MPD | dbSNP | MGI SNP Detail | Chr2:147197833 | f | Pax1 : Intron | 1 | SNP | C | A | A | A | C | C | A | A | A | C | C | A | A/C | |||||
| rs27294628 MPD | dbSNP | MGI SNP Detail | Chr2:147197939 | f | Pax1 : Intron | 1 | SNP | C | A | C | A | A | C | C | A | C | A | A | C | C | A | A/C | |||
| rs33447004 MPD | dbSNP | MGI SNP Detail | Chr2:147197990 | f | Pax1 : Intron | 1 | SNP | A | T | A | A | A/T | |||||||||||||
| rs27294627 MPD | dbSNP | MGI SNP Detail | Chr2:147198102 | f | Pax1 : Intron | 2 | SNP | G | G | T | G | T | T | G | G | G | T | G | T | T | G | G | G | T | G/T |
| rs27294626 MPD | dbSNP | MGI SNP Detail | Chr2:147198113 | f | Pax1 : Intron | 2 | SNP | A | A | C | A | C | C | A | A | A | C | C | C | A | A | A | C | A/C | |
| rs27294625 MPD | dbSNP | MGI SNP Detail | Chr2:147198139 | f | Pax1 : Intron | 2 | SNP | C | C | T | C | T | T | C | T | C | T | C | T | T | C | C | C | T | C/T |
| rs27294624 MPD | dbSNP | MGI SNP Detail | Chr2:147198357 | f | Pax1 : Intron | 2 | SNP | C | C | A | C | C | C | A | C | C | C | A | A/C | ||||||
| rs29908494 MPD | dbSNP | MGI SNP Detail | Chr2:147198408 | f | Pax1 : Intron | 1 | SNP | G | A | G | G | A/G | |||||||||||||
| rs27294623 MPD | dbSNP | MGI SNP Detail | Chr2:147198414 | f | Pax1 : Intron | 2 | SNP | C | C | G | G | C | C | C | G | C | C | C | G | C/G | |||||
| rs27294622 MPD | dbSNP | MGI SNP Detail | Chr2:147198484 | f | Pax1 : Intron | 1 | SNP | C | T | T | T | T | C | T | T | T | C | C | T | T | C/T | ||||
| rs27294621 MPD | dbSNP | MGI SNP Detail | Chr2:147198558 | f | Pax1 : Intron | 1 | SNP | T | C | C | C | T | C | T | C | T | T | C | C | C/T | |||||
| rs27294620 MPD | dbSNP | MGI SNP Detail | Chr2:147198656 | f | Pax1 : Intron | 1 | SNP | T | G | G | T | T | T | G/T | |||||||||||
| rs27294619 MPD | dbSNP | MGI SNP Detail | Chr2:147198681 | f | Pax1 : Intron | 1 | SNP | C | C | C | G | C | C | C | C | C | C | C | C | C | C/G | ||||
| rs27294618 MPD | dbSNP | MGI SNP Detail | Chr2:147198786 | f | Pax1 : Intron | 1 | SNP | C | T | C | T | T | C | C | T | T | T | C | C | T | C/T | ||||
| rs27294617 MPD | dbSNP | MGI SNP Detail | Chr2:147198957 | f | Pax1 : Intron | 1 | SNP | A | A | C | A | A | A | A | A | A | A | A | A | A | A/C | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27294616 MPD | dbSNP | MGI SNP Detail | Chr2:147199059 | f | Pax1 : Intron | 1 | SNP | C | T | T | T | C | C | T | C | T | T | C | C | C | T | C/T | |||
| rs27294615 MPD | dbSNP | MGI SNP Detail | Chr2:147199083 | f | Pax1 : Intron | 1 | SNP | T | G | T | G | T | T | G | T | G | G | T | T | T | G | G/T | |||
| rs27294614 MPD | dbSNP | MGI SNP Detail | Chr2:147199584 | f | Pax1 : mRNA-UTR | 1 | SNP | A | A | A | G | A | A | A | A | A | G | A | A/G | ||||||
| rs27294613 MPD | dbSNP | MGI SNP Detail | Chr2:147199607 | f | Pax1 : mRNA-UTR | 1 | SNP | T | T | T | T | C | T | T | T | T | T | T | T | T | C/T | ||||
| rs27294612 MPD | dbSNP | MGI SNP Detail | Chr2:147199619 | f | Pax1 : mRNA-UTR | 1 | SNP | C | C | C | C | A | C | A/C | |||||||||||
| rs27294611 MPD | dbSNP | MGI SNP Detail | Chr2:147199794 | f | Pax1 : mRNA-UTR | 1 | SNP | T | G | T | T | G/T | |||||||||||||
| rs27294610 MPD | dbSNP | MGI SNP Detail | Chr2:147200281 | f | Pax1 : mRNA-UTR | 1 | SNP | C | G | G | C | C | G | G | C | C/G | |||||||||
| rs27294609 MPD | dbSNP | MGI SNP Detail | Chr2:147200425 | f | Pax1 : mRNA-UTR | 1 | SNP | T | C | T | C | C | T | T | C | C | C | T | T | T | C | C/T | |||
| rs27294608 MPD | dbSNP | MGI SNP Detail | Chr2:147200557 | f | Pax1 : mRNA-UTR | 1 | SNP | A | G | A | G | G | A | A | G | G | G | A | A | A | G | A/G | |||
| rs27294607 MPD | dbSNP | MGI SNP Detail | Chr2:147200860 | f | Pax1 : Locus-Region | 1 | SNP | A | T | T | T | A | T | T | T | A | A | T | A/T | ||||||
| rs27294606 MPD | dbSNP | MGI SNP Detail | Chr2:147201127 | f | Pax1 : Locus-Region | 1 | SNP | C | C | C | C | A | C | C | C | C | A | C | A/C | ||||||
| rs27294605 MPD | dbSNP | MGI SNP Detail | Chr2:147201179 | f | Pax1 : Locus-Region | 1 | SNP | G | C | G | G | G | C | G | G | G | C | G | G | C/G | |||||
| rs27294604 MPD | dbSNP | MGI SNP Detail | Chr2:147201272 | f | Pax1 : Locus-Region | 1 | SNP | G | A | A | A | G | G | A | G | A | A | G | G | G | A | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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