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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Ldlr low density lipoprotein receptor MGI:96765 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs46233056 MPD | dbSNP | MGI SNP Detail | Chr9:21526571 | f | Ldlr : Locus-Region | 1 | SNP | G | G | G | G | G | G | A | G | G | G | A/G | |||||||
| rs47890620 MPD | dbSNP | MGI SNP Detail | Chr9:21526694 | f | Ldlr : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | C | G | G | G | C/G | |||||
| rs48460351 MPD | dbSNP | MGI SNP Detail | Chr9:21527671 | f | Ldlr : Locus-Region | 1 | SNP | T | T | T | T | T | T | T | T | A | T | T | T | T | T | A/T | |||
| rs50776485 MPD | dbSNP | MGI SNP Detail | Chr9:21528410 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C | C | C | C/T | ||||
| rs49592582 MPD | dbSNP | MGI SNP Detail | Chr9:21528518 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | T | C | T | C | C | C/T | ||||||||
| rs46489667 MPD | dbSNP | MGI SNP Detail | Chr9:21529778 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | A | A | A | G | A | G | A/G | ||||||
| rs50000901 MPD | dbSNP | MGI SNP Detail | Chr9:21530375 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | T | G | G/T | |||
| rs47746737 MPD | dbSNP | MGI SNP Detail | Chr9:21530429 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | T | G | G | T | G | G | G | G | G | G/T | |||
| rs49161668 MPD | dbSNP | MGI SNP Detail | Chr9:21530729 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||
| rs46415029 MPD | dbSNP | MGI SNP Detail | Chr9:21530759 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | T | G | T | G | T | G | T | G/T | |||
| rs48614182 MPD | dbSNP | MGI SNP Detail | Chr9:21530958 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | T | G | T | G | T | G | T | G/T | |||
| rs47389302 MPD | dbSNP | MGI SNP Detail | Chr9:21531064 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | A | G | A | G | G | A/G | |||
| rs46016239 MPD | dbSNP | MGI SNP Detail | Chr9:21531068 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | G | A/G | |||
| rs47435127 MPD | dbSNP | MGI SNP Detail | Chr9:21531124 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | C | T | C/T | |||||
| rs45737716 MPD | dbSNP | MGI SNP Detail | Chr9:21531263 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | A | C | A/C | ||
| rs48192114 MPD | dbSNP | MGI SNP Detail | Chr9:21531433 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||
| rs49521592 MPD | dbSNP | MGI SNP Detail | Chr9:21531740 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | A | A | C | C | A | C | C | A/C | |||||
| rs47073003 MPD | dbSNP | MGI SNP Detail | Chr9:21531831 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | A | G | G | A | G | G | A/G | ||||||
| rs51013981 MPD | dbSNP | MGI SNP Detail | Chr9:21531843 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | T | A | T | A | A/T | ||||||||
| rs49313478 MPD | dbSNP | MGI SNP Detail | Chr9:21533073 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | C | A | C | C | C | C | A | C | C | C | A/C | ||
| rs48092554 MPD | dbSNP | MGI SNP Detail | Chr9:21534050 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A/G | ||
| rs49881270 MPD | dbSNP | MGI SNP Detail | Chr9:21536130 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs48956138 MPD | dbSNP | MGI SNP Detail | Chr9:21536244 | f | Ldlr : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G/T | |||
| rs48864649 MPD | dbSNP | MGI SNP Detail | Chr9:21536261 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | T | C | C/T | |||
| rs6221511 MPD | dbSNP | MGI SNP Detail | Chr9:21536587 | f | Ldlr : Intron | 2 | SNP | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | G | G | A/G |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs6221926 MPD | dbSNP | MGI SNP Detail | Chr9:21536628 | f | Ldlr : Intron | 2 | SNP | C | C | C | C | C | C | C | T | C | C | T | C | C | C | C | T | C | C/T |
| rs52403544 MPD | dbSNP | MGI SNP Detail | Chr9:21536707 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | C | T | C | C | T | C | C | C | C/T | ||||
| rs6222502 MPD | dbSNP | MGI SNP Detail | Chr9:21536738 | f | Ldlr : Intron | 1 | SNP | A | G | A/G | |||||||||||||||
| rs6222507 MPD | dbSNP | MGI SNP Detail | Chr9:21536744 | f | Ldlr : Intron | 1 | SNP | T | C | C/T | |||||||||||||||
| rs6223168 MPD | dbSNP | MGI SNP Detail | Chr9:21536894 | f | Ldlr : Intron | 2 | SNP | C | C | C | C | C | C | A | A | C | C | A | C | C | C | C | A | C | A/C |
| rs6223614 MPD | dbSNP | MGI SNP Detail | Chr9:21536902 | f | Ldlr : Intron | 1 | SNP | T | C | C/T | |||||||||||||||
| rs6223686 MPD | dbSNP | MGI SNP Detail | Chr9:21536902 | f | Ldlr : Intron | 1 | SNP | C | T | C/T | |||||||||||||||
| rs52337948 MPD | dbSNP | MGI SNP Detail | Chr9:21537072 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | C | C | C | A | C | C | C | C | C | A/C | |||
| rs6224746 MPD | dbSNP | MGI SNP Detail | Chr9:21537124 | f | Ldlr : Intron | 2 | SNP | T | T | T | T | T | T | G | T | C | C | C | T | C | C | C | C/G/T | ||
| rs6224817 MPD | dbSNP | MGI SNP Detail | Chr9:21537149 | f | Ldlr : Intron | 1 | SNP | T | C | C/T | |||||||||||||||
| rs45919949 MPD | dbSNP | MGI SNP Detail | Chr9:21537245 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | A | G | A | A | G | A | A | A | A/G | ||||
| rs45810510 MPD | dbSNP | MGI SNP Detail | Chr9:21537261 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | C | T | C | C | C | C | T | C | C | C | C/T | ||
| rs48119527 MPD | dbSNP | MGI SNP Detail | Chr9:21537751 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G/T | |||
| rs50403714 MPD | dbSNP | MGI SNP Detail | Chr9:21537791 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | C/T | |||||
| rs49901813 MPD | dbSNP | MGI SNP Detail | Chr9:21537875 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | |||
| rs46714368 MPD | dbSNP | MGI SNP Detail | Chr9:21537966 | f | Ldlr : Coding-Synonymous | 1 | SNP | A | A | A | C | A | C | C | C | C | C | C | C | A/C | |||||
| rs51307178 MPD | dbSNP | MGI SNP Detail | Chr9:21538038 | f | Ldlr : Coding-Synonymous | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | C/T | |||||
| rs46288136 MPD | dbSNP | MGI SNP Detail | Chr9:21538146 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs49839137 MPD | dbSNP | MGI SNP Detail | Chr9:21538283 | f | Ldlr : Coding-NonSynonymous | 1 | SNP | C | C | C | C | G | C | C | C | C | C | C | C | C | C | C/G | |||
| rs50072581 MPD | dbSNP | MGI SNP Detail | Chr9:21538305 | f | Ldlr : Coding-Synonymous | 1 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | C/T | |||||
| rs46112338 MPD | dbSNP | MGI SNP Detail | Chr9:21538951 | f | Ldlr : Intron | 1 | SNP | T | C | T | T | C | T | T | T | C/T | |||||||||
| rs46765655 MPD | dbSNP | MGI SNP Detail | Chr9:21539634 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs46544311 MPD | dbSNP | MGI SNP Detail | Chr9:21539637 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||||
| rs50935055 MPD | dbSNP | MGI SNP Detail | Chr9:21539854 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | T | T | G | T | T | T | T | G | T | G/T | |||
| rs49601312 MPD | dbSNP | MGI SNP Detail | Chr9:21540221 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs48352978 MPD | dbSNP | MGI SNP Detail | Chr9:21541030 | f | Ldlr : Intron | 1 | SNP | A | A | G | A | A | A | A | A | A | A | A | A/G | ||||||
| rs51822254 MPD | dbSNP | MGI SNP Detail | Chr9:21541182 | f | Ldlr : Intron | 1 | SNP | T | T | C | T | T | T | T | T | T | T | C/T | |||||||
| rs51211264 MPD | dbSNP | MGI SNP Detail | Chr9:21541610 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | A/G | ||||
| rs46554131 MPD | dbSNP | MGI SNP Detail | Chr9:21541683 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | T | T | T | C | T | C/T | |||||
| rs50768764 MPD | dbSNP | MGI SNP Detail | Chr9:21541754 | f | Ldlr : Coding-NonSynonymous | 1 | SNP | A | A | A | G | A | A | G | A | A | A | A | A/G | ||||||
| rs46688779 MPD | dbSNP | MGI SNP Detail | Chr9:21542243 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | A | G | G | A | G | G | G | G | G | A/G | ||||
| rs48885249 MPD | dbSNP | MGI SNP Detail | Chr9:21542309 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs48888370 MPD | dbSNP | MGI SNP Detail | Chr9:21542392 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | T | C | T | T | T | C | C | C/T | |||||||
| rs47109984 MPD | dbSNP | MGI SNP Detail | Chr9:21542588 | f | Ldlr : Intron | 1 | SNP | G | G | G | A | G | G | G | G | G | A/G | ||||||||
| rs49053978 MPD | dbSNP | MGI SNP Detail | Chr9:21542617 | f | Ldlr : Intron | 1 | SNP | G | G | G | A | G | G | G | G | G | G | G | G | A/G | |||||
| rs51373116 MPD | dbSNP | MGI SNP Detail | Chr9:21543589 | f | Ldlr : Intron | 1 | SNP | G | G | G | C | G | G | C | G | G | G | C/G | |||||||
| rs50508271 MPD | dbSNP | MGI SNP Detail | Chr9:21543871 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | A | C | C | C | C | C | C | C | A/C | |||||
| rs52044256 MPD | dbSNP | MGI SNP Detail | Chr9:21544225 | f | Ldlr : Coding-Synonymous | 1 | SNP | A | A | A | G | A | A | A | A | A | A | A | A | A/G | |||||
| rs48295426 MPD | dbSNP | MGI SNP Detail | Chr9:21544472 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | T | C | C | T | C | C/T | |||||||
| rs52276269 MPD | dbSNP | MGI SNP Detail | Chr9:21544613 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A/G | |||||||
| rs48877973 MPD | dbSNP | MGI SNP Detail | Chr9:21545672 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | A | A | A | A | A | A | A | A/G | |||||
| rs51663066 MPD | dbSNP | MGI SNP Detail | Chr9:21545719 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| rs45806496 MPD | dbSNP | MGI SNP Detail | Chr9:21546127 | f | Ldlr : Intron | 1 | SNP | A | A | A | G | A | G | G | G | G | G | G | G | A/G | |||||
| rs48831161 MPD | dbSNP | MGI SNP Detail | Chr9:21546257 | f | Ldlr : Intron | 1 | SNP | T | T | T | C | T | C | C | C/T | ||||||||||
| rs49790641 MPD | dbSNP | MGI SNP Detail | Chr9:21546411 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | G | T | G | T | T | G | G | T | G/T | ||||
| rs50517329 MPD | dbSNP | MGI SNP Detail | Chr9:21546622 | f | Ldlr : Intron | 1 | SNP | C | C | C | T | C | T | T | T | T | T | C/T | |||||||
| rs48011886 MPD | dbSNP | MGI SNP Detail | Chr9:21547144 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | T | C | T | T | T | T | T | C/T | ||||||
| rs48128274 MPD | dbSNP | MGI SNP Detail | Chr9:21548239 | f | Ldlr : Intron | 1 | SNP | C | C | C | C | C | C | T | C | T | C | T | T | C/T | |||||
| rs49266525 MPD | dbSNP | MGI SNP Detail | Chr9:21548516 | f | Ldlr : Intron | 1 | SNP | G | G | G | T | G | T | T | T | T | T | G/T | |||||||
| rs46709106 MPD | dbSNP | MGI SNP Detail | Chr9:21548574 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs48510807 MPD | dbSNP | MGI SNP Detail | Chr9:21548628 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A/G | |||||
| rs48360276 MPD | dbSNP | MGI SNP Detail | Chr9:21549171 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | A | T | T | A | T | T | T | T | T | T | A/T | ||
| rs51164837 MPD | dbSNP | MGI SNP Detail | Chr9:21549590 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | C | G | G | C | G | G | G | G | G | G | C/G | ||
| rs51636073 MPD | dbSNP | MGI SNP Detail | Chr9:21549868 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | G | A | G | G | G | G | A | G | G | G | A/G | ||
| rs47410905 MPD | dbSNP | MGI SNP Detail | Chr9:21550853 | f | Ldlr : Coding-NonSynonymous | 1 | SNP | A | A | A | A | A | G | A | G | G | G | G | A | G | G | G | A/G | ||
| rs45745867 MPD | dbSNP | MGI SNP Detail | Chr9:21551705 | f | Ldlr : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | T | T | T | T | C | T | T | T | C/T | ||
| rs51233419 MPD | dbSNP | MGI SNP Detail | Chr9:21551732 | f | Ldlr : Coding-Synonymous | 1 | SNP | T | T | T | T | T | C | T | C | C | C | C | T | C | C | C | C/T | ||
| rs46203404 MPD | dbSNP | MGI SNP Detail | Chr9:21551776 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | G/T | ||
| rs50151880 MPD | dbSNP | MGI SNP Detail | Chr9:21551789 | f | Ldlr : Intron | 1 | SNP | G | G | G | G | G | A | G | A | A | A | A | G | A | A | A | A/G | ||
| rs46281138 MPD | dbSNP | MGI SNP Detail | Chr9:21551916 | f | Ldlr : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | ||
| rs46691006 MPD | dbSNP | MGI SNP Detail | Chr9:21551991 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | C/T | ||
| rs50241753 MPD | dbSNP | MGI SNP Detail | Chr9:21552434 | f | Ldlr : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||
| rs50920000 MPD | dbSNP | MGI SNP Detail | Chr9:21552626 | f | Ldlr : mRNA-UTR | 1 | SNP | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | A/C | ||
| rs50053138 MPD | dbSNP | MGI SNP Detail | Chr9:21552665 | f | Ldlr : mRNA-UTR | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A/G | ||
| rs48183319 MPD | dbSNP | MGI SNP Detail | Chr9:21552916 | f | Ldlr : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | A | A | A | A | T | A | A | A | A/T | |||
| rs49151647 MPD | dbSNP | MGI SNP Detail | Chr9:21553233 | f | Ldlr : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/22/2013 MGI 5.13 |
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