About   Help   FAQ
Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Syngap1
synaptic Ras GTPase activating protein 1 homolog (rat)
MGI:3039785

95 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs108655081
MPD | dbSNP | MGI SNP Detail
Chr17:26940140fCuta : Locus-Region
hlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 1312 bp upstream of
1SNP           T  A   A/T
rs107703395
MPD | dbSNP | MGI SNP Detail
Chr17:26940355fCuta : Locus-Region
hlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 1097 bp upstream of
1SNP           C  C   C
rs107735417
MPD | dbSNP | MGI SNP Detail
Chr17:26940539fCuta : Locus-Region
hlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 913 bp upstream of
1SNP           G  A   A/G
rs107852974
MPD | dbSNP | MGI SNP Detail
Chr17:26940566fCuta : Locus-Region
hlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 886 bp upstream of
1SNP           T  A   A/T
rs218935951
MPD | dbSNP | MGI SNP Detail
Chr17:26940629fCuta : Locus-Region
hlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 823 bp upstream of
1SNP           T  G   G/T
rs108426940
MPD | dbSNP | MGI SNP Detail
Chr17:26941859fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs108651131
MPD | dbSNP | MGI SNP Detail
Chr17:26941913fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs108683429
MPD | dbSNP | MGI SNP Detail
Chr17:26942480fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs108883847
MPD | dbSNP | MGI SNP Detail
Chr17:26942519fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  G   C/G
rs108385088
MPD | dbSNP | MGI SNP Detail
Chr17:26942926fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  G   C/G
rs108809526
MPD | dbSNP | MGI SNP Detail
Chr17:26942928fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  G   C/G
rs108085814
MPD | dbSNP | MGI SNP Detail
Chr17:26943037fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  A   A/T
rs107617893
MPD | dbSNP | MGI SNP Detail
Chr17:26943060fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108156084
MPD | dbSNP | MGI SNP Detail
Chr17:26943270fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  G   G/T
rs107755643
MPD | dbSNP | MGI SNP Detail
Chr17:26943303fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108254591
MPD | dbSNP | MGI SNP Detail
Chr17:26943630fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  G   G/T
rs108741006
MPD | dbSNP | MGI SNP Detail
Chr17:26943828fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  G   G
rs108112672
MPD | dbSNP | MGI SNP Detail
Chr17:26943952fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108892813
MPD | dbSNP | MGI SNP Detail
Chr17:26944053fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  A   A/C
rs108600069
MPD | dbSNP | MGI SNP Detail
Chr17:26944082fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  C   A/C
rs108910533
MPD | dbSNP | MGI SNP Detail
Chr17:26945023fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  A   A/T
rs108566661
MPD | dbSNP | MGI SNP Detail
Chr17:26945050fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs107859448
MPD | dbSNP | MGI SNP Detail
Chr17:26945194fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs108238206
MPD | dbSNP | MGI SNP Detail
Chr17:26945277fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  G   G
rs107809348
MPD | dbSNP | MGI SNP Detail
Chr17:26945767fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs108805549
MPD | dbSNP | MGI SNP Detail
Chr17:26947141fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  T   A/T
rs108814261
MPD | dbSNP | MGI SNP Detail
Chr17:26947164fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  T   G/T
rs107829986
MPD | dbSNP | MGI SNP Detail
Chr17:26947212fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs108275751
MPD | dbSNP | MGI SNP Detail
Chr17:26947341fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs107779854
MPD | dbSNP | MGI SNP Detail
Chr17:26947626fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           C  T   C/T
rs108644390
MPD | dbSNP | MGI SNP Detail
Chr17:26947977fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           T  C   C/T
rs249007447
MPD | dbSNP | MGI SNP Detail
Chr17:26948129fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           T  C   C/T
rs107634374
MPD | dbSNP | MGI SNP Detail
Chr17:26949194fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           G  A   A/G
rs108097168
MPD | dbSNP | MGI SNP Detail
Chr17:26949397fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           T  C   C/T
rs108668789
MPD | dbSNP | MGI SNP Detail
Chr17:26949652fhlb156 : within coordinates of
Hst4 : within coordinates of
Mir3083 : Locus-Region
Syngap1 : Intron
1SNP           C  A   A/C
rs108348392
MPD | dbSNP | MGI SNP Detail
Chr17:26950200fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  G   C/G
rs108859882
MPD | dbSNP | MGI SNP Detail
Chr17:26950408fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs108648682
MPD | dbSNP | MGI SNP Detail
Chr17:26950640fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  C   C/G
rs108186429
MPD | dbSNP | MGI SNP Detail
Chr17:26951057fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs108732698
MPD | dbSNP | MGI SNP Detail
Chr17:26951810fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs108079700
MPD | dbSNP | MGI SNP Detail
Chr17:26952183fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs222540913
MPD | dbSNP | MGI SNP Detail
Chr17:26952566fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Coding-Synonymous
1SNP           C  T   C/T
rs108085909
MPD | dbSNP | MGI SNP Detail
Chr17:26953187fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  C   A/C
rs47920571
MPD | dbSNP | MGI SNP Detail
Chr17:26953275fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
2SNPC C CC CCTCCC TC  C/T
rs107963976
MPD | dbSNP | MGI SNP Detail
Chr17:26953331fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs108510928
MPD | dbSNP | MGI SNP Detail
Chr17:26953612fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108668093
MPD | dbSNP | MGI SNP Detail
Chr17:26954289fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs218279335
MPD | dbSNP | MGI SNP Detail
Chr17:26955131fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108023106
MPD | dbSNP | MGI SNP Detail
Chr17:26955488fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs108773343
MPD | dbSNP | MGI SNP Detail
Chr17:26955595fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  A   A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs107996041
MPD | dbSNP | MGI SNP Detail
Chr17:26955716fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  G   G
rs108220501
MPD | dbSNP | MGI SNP Detail
Chr17:26955836fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108471657
MPD | dbSNP | MGI SNP Detail
Chr17:26955895fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs229224385
MPD | dbSNP | MGI SNP Detail
Chr17:26956103fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs246374676
MPD | dbSNP | MGI SNP Detail
Chr17:26956104fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs48635801
MPD | dbSNP | MGI SNP Detail
Chr17:26956468fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPC CCCCCCCAC CC  ACA/C
rs107940373
MPD | dbSNP | MGI SNP Detail
Chr17:26957312fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Coding-Synonymous
1SNP           C  T   C/T
rs107702743
MPD | dbSNP | MGI SNP Detail
Chr17:26957555fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Coding-Synonymous
1SNP           G  G   G
rs51497500
MPD | dbSNP | MGI SNP Detail
Chr17:26957801fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Coding-Synonymous
2SNPA AAAACAACACAACACCA/C
rs107802148
MPD | dbSNP | MGI SNP Detail
Chr17:26957920fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs51347925
MPD | dbSNP | MGI SNP Detail
Chr17:26958384fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPG   GGGGGGG GG GCGC/G
rs107954366
MPD | dbSNP | MGI SNP Detail
Chr17:26958527fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  G   G
rs253132833
MPD | dbSNP | MGI SNP Detail
Chr17:26958685fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs108277150
MPD | dbSNP | MGI SNP Detail
Chr17:26958932fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  T   A/T
rs46216079
MPD | dbSNP | MGI SNP Detail
Chr17:26960140fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
2SNPG GGGGAGGA GG AGA A/G
rs108045381
MPD | dbSNP | MGI SNP Detail
Chr17:26960288fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs48948185
MPD | dbSNP | MGI SNP Detail
Chr17:26960583fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPG G GGGGGAG GG GGGA/G
rs49567133
MPD | dbSNP | MGI SNP Detail
Chr17:26962405fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Coding-Synonymous
1SNPG GGGGGGGGG GG GGCC/G
rs46179311
MPD | dbSNP | MGI SNP Detail
Chr17:26962699fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPC CCCCCCCTC CC CCCC/T
rs49937823
MPD | dbSNP | MGI SNP Detail
Chr17:26962766fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
2SNPT TTTTGTTTTTTGGTTTG/T
rs50622529
MPD | dbSNP | MGI SNP Detail
Chr17:26962778fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPG GGGGGGGGG GG GAGA/G
rs51070643
MPD | dbSNP | MGI SNP Detail
Chr17:26962787fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPC CCCCCCCTC CC CCCC/T
rs108799090
MPD | dbSNP | MGI SNP Detail
Chr17:26962863fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs262125105
MPD | dbSNP | MGI SNP Detail
Chr17:26963156fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs47928794
MPD | dbSNP | MGI SNP Detail
Chr17:26964037fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
2SNPT TTTTCTTCTTTCCTCTC/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs49129276
MPD | dbSNP | MGI SNP Detail
Chr17:26964077fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPT TTTTTTTCT TT TTTC/T
rs48459242
MPD | dbSNP | MGI SNP Detail
Chr17:26964595fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNPC   CCCCCAC C  CACA/C
rs48283586
MPD | dbSNP | MGI SNP Detail
Chr17:26964749fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
2SNPA AAAAGAAGAGAGGAGGA/G
rs108702614
MPD | dbSNP | MGI SNP Detail
Chr17:26965303fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  C   C
rs229191206
MPD | dbSNP | MGI SNP Detail
Chr17:26965421fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs107731249
MPD | dbSNP | MGI SNP Detail
Chr17:26965588fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs107771713
MPD | dbSNP | MGI SNP Detail
Chr17:26966170fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs107688771
MPD | dbSNP | MGI SNP Detail
Chr17:26966784fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  A   A
rs108888497
MPD | dbSNP | MGI SNP Detail
Chr17:26967275fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  C   C
rs33439287
MPD | dbSNP | MGI SNP Detail
Chr17:26967279fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
3SNP CC    C   C  C   C
rs108260130
MPD | dbSNP | MGI SNP Detail
Chr17:26968738fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs108125260
MPD | dbSNP | MGI SNP Detail
Chr17:26969310fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs108371848
MPD | dbSNP | MGI SNP Detail
Chr17:26969440fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  A   A/G
rs108835484
MPD | dbSNP | MGI SNP Detail
Chr17:26969528fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           C  T   C/T
rs107736511
MPD | dbSNP | MGI SNP Detail
Chr17:26969587fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           G  G   G
rs108163857
MPD | dbSNP | MGI SNP Detail
Chr17:26969741fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           T  C   C/T
rs108866023
MPD | dbSNP | MGI SNP Detail
Chr17:26970386fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : Intron
1SNP           A  G   A/G
rs107768179
MPD | dbSNP | MGI SNP Detail
Chr17:26970829fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 184 bp downstream of
1SNP           A  G   A/G
rs225387466
MPD | dbSNP | MGI SNP Detail
Chr17:26971351fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 706 bp downstream of
Zbtb9 : Locus-Region
1SNP           A  G   A/G
rs245525941
MPD | dbSNP | MGI SNP Detail
Chr17:26972368fhlb156 : within coordinates of
Hst4 : within coordinates of
Syngap1 : 1723 bp downstream of
Zbtb9 : Locus-Region
1SNP           C  T   C/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory