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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Itgb4 integrin beta 4 MGI:96613 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs27001438 MPD | dbSNP | MGI SNP Detail | Chr11:115838327 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C/T | ||
| rs27001437 MPD | dbSNP | MGI SNP Detail | Chr11:115838721 | f | Itgb4 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | G | A | A/G | ||||||
| rs27001436 MPD | dbSNP | MGI SNP Detail | Chr11:115838963 | f | Itgb4 : Intron | 1 | SNP | A | A | A | G | A | G | A/G | |||||||||||
| rs27001435 MPD | dbSNP | MGI SNP Detail | Chr11:115839680 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||
| rs29388347 MPD | dbSNP | MGI SNP Detail | Chr11:115840000 | f | Itgb4 : Intron | 1 | SNP | G | A | A/G | |||||||||||||||
| rs27001434 MPD | dbSNP | MGI SNP Detail | Chr11:115840372 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||||
| rs27001433 MPD | dbSNP | MGI SNP Detail | Chr11:115840488 | f | Itgb4 : Intron | 1 | SNP | A | A | A | A | A | A | A | C | A | A | A | A | C | A | A/C | |||
| rs27001432 MPD | dbSNP | MGI SNP Detail | Chr11:115840680 | f | Itgb4 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | |||
| rs27001431 MPD | dbSNP | MGI SNP Detail | Chr11:115841345 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs27001430 MPD | dbSNP | MGI SNP Detail | Chr11:115842002 | f | Itgb4 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | T | C | C/T | ||||
| rs27001429 MPD | dbSNP | MGI SNP Detail | Chr11:115842489 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||
| rs27001428 MPD | dbSNP | MGI SNP Detail | Chr11:115842644 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||
| rs27001427 MPD | dbSNP | MGI SNP Detail | Chr11:115843802 | f | Itgb4 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | A | C | A | A/C | ||||
| rs27001426 MPD | dbSNP | MGI SNP Detail | Chr11:115844015 | f | Itgb4 : Coding-Synonymous | 1 | SNP | A | A | A | A | A | A | A | C | A | A | A | A | C | A/C | ||||
| rs27001425 MPD | dbSNP | MGI SNP Detail | Chr11:115844161 | f | Itgb4 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C/T | |||
| rs27001424 MPD | dbSNP | MGI SNP Detail | Chr11:115846451 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C/T | |||||||
| rs27001423 MPD | dbSNP | MGI SNP Detail | Chr11:115848014 | f | Itgb4 : Coding-NonSynonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C/T | ||
| rs27001422 MPD | dbSNP | MGI SNP Detail | Chr11:115848628 | f | Itgb4 : Intron | 2 | SNP | G | G | A | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | |
| rs29405765 MPD | dbSNP | MGI SNP Detail | Chr11:115850042 | f | Itgb4 : Coding-Synonymous | 1 | SNP | C | T | C | C | C/T | |||||||||||||
| rs29459404 MPD | dbSNP | MGI SNP Detail | Chr11:115851109 | f | Itgb4 : Coding-Synonymous | 1 | SNP | C | C | T | C | C/T | |||||||||||||
| rs29436586 MPD | dbSNP | MGI SNP Detail | Chr11:115852771 | f | Itgb4 : Intron | 1 | SNP | T | T | C | C/T | ||||||||||||||
| rs29436762 MPD | dbSNP | MGI SNP Detail | Chr11:115857012 | f | Itgb4 : Intron | 1 | SNP | C | C | A | C | A/C | |||||||||||||
| rs29457327 MPD | dbSNP | MGI SNP Detail | Chr11:115857012 | f | Itgb4 : Intron | 1 | SNP | C | C | A | C | A/C | |||||||||||||
| rs29416059 MPD | dbSNP | MGI SNP Detail | Chr11:115857575 | f | Itgb4 : Intron | 1 | SNP | A | A | T | T | T | A/T | ||||||||||||
| rs29465216 MPD | dbSNP | MGI SNP Detail | Chr11:115857946 | f | Itgb4 : Intron | 1 | SNP | T | T | G | T | G/T | |||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs29478870 MPD | dbSNP | MGI SNP Detail | Chr11:115857987 | f | Itgb4 : Intron | 1 | SNP | T | T | A | T | A/T | |||||||||||||
| rs29416616 MPD | dbSNP | MGI SNP Detail | Chr11:115858161 | f | Itgb4 : Intron | 1 | SNP | T | T | A | T | A/T | |||||||||||||
| rs3677248 MPD | dbSNP | MGI SNP Detail | Chr11:115858215 | f | Itgb4 : Intron | 2 | SNP | G | G | G | A | G | A/G | ||||||||||||
| rs3677394 MPD | dbSNP | MGI SNP Detail | Chr11:115858302 | f | Itgb4 : Intron | 2 | SNP | T | T | T | C | T | C/T | ||||||||||||
| rs3678567 MPD | dbSNP | MGI SNP Detail | Chr11:115858457 | f | Itgb4 : Intron | 2 | SNP | A | A | A | G | A | A/G | ||||||||||||
| rs29475441 MPD | dbSNP | MGI SNP Detail | Chr11:115859245 | f | Itgb4 : Intron | 1 | SNP | T | T | T | C | T | C/T | ||||||||||||
| rs29385765 MPD | dbSNP | MGI SNP Detail | Chr11:115859251 | f | Itgb4 : Intron | 1 | SNP | T | T | T | C | T | C/T | ||||||||||||
| rs29430524 MPD | dbSNP | MGI SNP Detail | Chr11:115859261 | f | Itgb4 : Intron | 1 | SNP | C | C | C | T | C | C/T | ||||||||||||
| rs29421857 MPD | dbSNP | MGI SNP Detail | Chr11:115859308 | f | Itgb4 : Coding-Synonymous | 1 | SNP | A | A | A | G | A | A/G | ||||||||||||
| rs27001421 MPD | dbSNP | MGI SNP Detail | Chr11:115859557 | f | Itgb4 : Intron | 1 | SNP | A | A | A | G | A | G | G | A | G | A/G | ||||||||
| rs27001420 MPD | dbSNP | MGI SNP Detail | Chr11:115860005 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | A | G | A | G | A/G | |||
| rs29418257 MPD | dbSNP | MGI SNP Detail | Chr11:115860157 | f | Itgb4 : Intron | 1 | SNP | A | A | A | G | A | A/G | ||||||||||||
| rs29388974 MPD | dbSNP | MGI SNP Detail | Chr11:115860261 | f | Itgb4 : Intron | 1 | SNP | T | T | T | G | T | G/T | ||||||||||||
| rs29427033 MPD | dbSNP | MGI SNP Detail | Chr11:115860261 | f | Itgb4 : Intron | 1 | SNP | T | T | T | C | T | C/T | ||||||||||||
| rs29415089 MPD | dbSNP | MGI SNP Detail | Chr11:115860404 | f | Itgb4 : Intron | 1 | SNP | G | G | G | A | G | A/G | ||||||||||||
| rs27001419 MPD | dbSNP | MGI SNP Detail | Chr11:115860659 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | A/G | ||
| rs27001418 MPD | dbSNP | MGI SNP Detail | Chr11:115860712 | f | Itgb4 : Intron | 1 | SNP | T | C | C | C | C/T | |||||||||||||
| rs27001417 MPD | dbSNP | MGI SNP Detail | Chr11:115860766 | f | Itgb4 : Intron | 1 | SNP | G | G | T | G | G/T | |||||||||||||
| rs27001416 MPD | dbSNP | MGI SNP Detail | Chr11:115861212 | f | Itgb4 : Coding-Synonymous | 2 | SNP | A | A | A | A | G | G | A | A | G | G | A | G | A/G | |||||
| rs29443727 MPD | dbSNP | MGI SNP Detail | Chr11:115861335 | f | Itgb4 : Intron | 1 | SNP | A | A | G | A/G | ||||||||||||||
| rs27001415 MPD | dbSNP | MGI SNP Detail | Chr11:115861442 | f | Itgb4 : Intron | 1 | SNP | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | ||||
| rs27001414 MPD | dbSNP | MGI SNP Detail | Chr11:115861460 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs27001413 MPD | dbSNP | MGI SNP Detail | Chr11:115861482 | f | Itgb4 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A/G | |||||||
| rs27001412 MPD | dbSNP | MGI SNP Detail | Chr11:115861491 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | A | G | A | G | G | A | G | A/G | ||
| rs27001411 MPD | dbSNP | MGI SNP Detail | Chr11:115861909 | f | Itgb4 : Coding-Synonymous | 1 | SNP | G | A | G | A | A/G | |||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27001410 MPD | dbSNP | MGI SNP Detail | Chr11:115861994 | f | Itgb4 : Coding-NonSynonymous | 1 | SNP | A | A | A | A | A | C | A | A | C | A | C | A | A | C | A | A/C | ||
| rs27001409 MPD | dbSNP | MGI SNP Detail | Chr11:115862013 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C | C | C/G | ||
| rs27001408 MPD | dbSNP | MGI SNP Detail | Chr11:115862185 | f | Itgb4 : Intron | 1 | SNP | A | G | G | A | A | G | A/G | |||||||||||
| rs27001407 MPD | dbSNP | MGI SNP Detail | Chr11:115862239 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | A | C | C | A | C | C | C | C | A | C | A/C | ||
| rs27001406 MPD | dbSNP | MGI SNP Detail | Chr11:115862289 | f | Itgb4 : Intron | 1 | SNP | A | A | A | A | A | T | A | A | A | A | A | A | A | A | A/T | |||
| rs27001405 MPD | dbSNP | MGI SNP Detail | Chr11:115863034 | f | Itgb4 : Intron | 1 | SNP | C | T | C | T | C/T | |||||||||||||
| rs29469505 MPD | dbSNP | MGI SNP Detail | Chr11:115863959 | f | Itgb4 : Intron | 1 | SNP | A | G | G | A/G | ||||||||||||||
| rs27001404 MPD | dbSNP | MGI SNP Detail | Chr11:115864076 | f | Itgb4 : Intron | 2 | SNP | C | C | C | T | C | C | C | T | C | C | C | C/T | ||||||
| rs27001403 MPD | dbSNP | MGI SNP Detail | Chr11:115864202 | f | Itgb4 : Intron | 1 | SNP | G | G | G | C | G | G | C | G | G | G | G | C | C/G | |||||
| rs27001402 MPD | dbSNP | MGI SNP Detail | Chr11:115864256 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | T | C | C/T | |||
| rs27001401 MPD | dbSNP | MGI SNP Detail | Chr11:115865997 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | A/G | ||
| rs27001400 MPD | dbSNP | MGI SNP Detail | Chr11:115866054 | f | Itgb4 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | C | T | T | T | C | T | C/T | |||
| rs27001399 MPD | dbSNP | MGI SNP Detail | Chr11:115866081 | f | Itgb4 : Intron | 1 | SNP | T | T | T | T | T | A | T | T | T | T | T | A | A/T | |||||
| rs27001398 MPD | dbSNP | MGI SNP Detail | Chr11:115866276 | f | Itgb4 : Intron | 2 | SNP | T | G | T | T | G | G | G | T | T | G | T | G | T | T | G | G | G/T | |
| rs27001397 MPD | dbSNP | MGI SNP Detail | Chr11:115866330 | f | Itgb4 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | C | C/T | |||||
| rs29476382 MPD | dbSNP | MGI SNP Detail | Chr11:115867095 | f | Itgb4 : Intron | 1 | SNP | G | G | G | G | T | G/T | ||||||||||||
| rs27001396 MPD | dbSNP | MGI SNP Detail | Chr11:115867103 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C/T | |||||||
| rs27001395 MPD | dbSNP | MGI SNP Detail | Chr11:115867489 | f | Itgb4 : Intron | 1 | SNP | T | T | C | T | C | T | C | C/T | ||||||||||
| rs27001394 MPD | dbSNP | MGI SNP Detail | Chr11:115867582 | f | Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C/T | ||
| rs27001393 MPD | dbSNP | MGI SNP Detail | Chr11:115867680 | f | Galk1 : Locus-Region Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | C | A | C | A/C | ||||
| rs27001392 MPD | dbSNP | MGI SNP Detail | Chr11:115867728 | f | Galk1 : Locus-Region Itgb4 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A/G | |||||
| rs27001391 MPD | dbSNP | MGI SNP Detail | Chr11:115867883 | f | Galk1 : Locus-Region Itgb4 : Coding-NonSynonymous | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C/T | |||
| rs27001390 MPD | dbSNP | MGI SNP Detail | Chr11:115867936 | f | Galk1 : Locus-Region Itgb4 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | G | T | T | T | G | T | G/T | |||
| rs27001389 MPD | dbSNP | MGI SNP Detail | Chr11:115867981 | f | Galk1 : Locus-Region Itgb4 : Intron | 1 | SNP | C | C | C | C | C | C | C | G | C | C | C | C | G | C | C/G | |||
| rs27001388 MPD | dbSNP | MGI SNP Detail | Chr11:115868264 | f | Galk1 : Locus-Region Itgb4 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | T | G | G | G | G/T | ||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs13460240 MPD | dbSNP | MGI SNP Detail | Chr11:115868933 | f | Galk1 : Locus-Region Itgb4 : Coding-Synonymous | 2 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | C | T | T | C | T | C/T |
| rs27001387 MPD | dbSNP | MGI SNP Detail | Chr11:115869137 | f | Galk1 : Locus-Region Itgb4 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | A | G | G | A | A/G | ||||||||
| rs27001386 MPD | dbSNP | MGI SNP Detail | Chr11:115869553 | f | Galk1 : Locus-Region Itgb4 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | A | G | G | G | G | A | G | A/G | ||
| rs29408609 MPD | dbSNP | MGI SNP Detail | Chr11:115870078 | f | Galk1 : Intron Itgb4 : Locus-Region | 1 | SNP | G | C | G | C/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 06/05/2013 MGI 5.13 |
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