About   Help   FAQ
Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Il6
interleukin 6
MGI:96559

59 matching SNPs displayed
Full result set is also available in a tab-delimited format.
Exclude SNPs that map to multiple locations

Legend
*The reference flanking sequence for this SNP maps to multiple locations in the mouse genome.
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47377344 *
MPD | dbSNP | MGI SNP Detail
Chr5:5935828f 1SNP  T       T                T
rs49658515
MPD | dbSNP | MGI SNP Detail
Chr5:30011181fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPA   A A   AA A     AA   AT A/T
rs6342045
MPD | dbSNP | MGI SNP Detail
Chr5:30011237fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
2SNP TT    T CT           C    C/T
rs6342586
MPD | dbSNP | MGI SNP Detail
Chr5:30011338fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
3SNPTTTTT TTGGTTGT     TT G TGGG/T
rs48971818
MPD | dbSNP | MGI SNP Detail
Chr5:30011366fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPG GGG G G GGGG     GG   GGAA/G
rs47365920
MPD | dbSNP | MGI SNP Detail
Chr5:30011521fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
2SNPTTTTT T A TTAT     TT A TAAA/T
rs49804008
MPD | dbSNP | MGI SNP Detail
Chr5:30011613fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
2SNPCCCCC C C CCTC     CC T CTCC/T
rs48682895
MPD | dbSNP | MGI SNP Detail
Chr5:30011699fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
2SNPAAAAA A G AAGA     AA G AGGA/G
rs49246410
MPD | dbSNP | MGI SNP Detail
Chr5:30011784fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPT TTT T T TTTT     TT   TTGG/T
rs50963527
MPD | dbSNP | MGI SNP Detail
Chr5:30011990fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPA AAA A G AAGA     AA   AGGA/G
rs48044179
MPD | dbSNP | MGI SNP Detail
Chr5:30012089fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPG GGG G A GGGG     GG   GGGA/G
rs51222859
MPD | dbSNP | MGI SNP Detail
Chr5:30012173fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPC CCC C T CCCC     CC   CCCC/T
rs51483465
MPD | dbSNP | MGI SNP Detail
Chr5:30012280fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPC CCC C T CCCC     CC   CCCC/T
rs47822085
MPD | dbSNP | MGI SNP Detail
Chr5:30012323fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPC CCC C G CCCC     CC   CC C/G
rs52423910
MPD | dbSNP | MGI SNP Detail
Chr5:30012780fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPA AAA A C AAAA     AA   AAAA/C
rs49801437
MPD | dbSNP | MGI SNP Detail
Chr5:30013327fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C T CCCC     CC   CCCC/T
rs51982554
MPD | dbSNP | MGI SNP Detail
Chr5:30013603fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C C CCGC     CC   CGCC/G
rs46697861
MPD | dbSNP | MGI SNP Detail
Chr5:30013621fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPT TTT T C TTTT     TT   TTTC/T
rs51712107
MPD | dbSNP | MGI SNP Detail
Chr5:30013776fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C T CCCC     CC   CCCC/T
rs46713580
MPD | dbSNP | MGI SNP Detail
Chr5:30013796fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPT TTT T T TTCT     TT   TTTC/T
rs47820957
MPD | dbSNP | MGI SNP Detail
Chr5:30013861fD5Mit44 : within coordinates of
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C C CCTC     CC   CTCC/T
rs49386484
MPD | dbSNP | MGI SNP Detail
Chr5:30013973fD5Mit44 : within coordinates of
D5Nds8 : within coordinates of
Del(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPG GGG G G GGAG     GG   GAGA/G
rs8259839
MPD | dbSNP | MGI SNP Detail
Chr5:30014367fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
7Mixed  - -- -- -   -T-G-  - -   -/A/C/G/T
rs8259846
MPD | dbSNP | MGI SNP Detail
Chr5:30014410fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNP  T TTTTT T   TCTTT  T T   C/T
rs8259847
MPD | dbSNP | MGI SNP Detail
Chr5:30014605fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNP  A AAAAA A   ATAAA  A A   A/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs8259848
MPD | dbSNP | MGI SNP Detail
Chr5:30014617fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNP  T TTTTT T   TCTTT  T T   C/T
rs8259849
MPD | dbSNP | MGI SNP Detail
Chr5:30014630fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNP    G GGG G   GAGGG  G G   A/G
rs8259850
MPD | dbSNP | MGI SNP Detail
Chr5:30014657fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
2SNPA AAA AAG AAGAA AAAAAA AAGAA/G
rs47846052
MPD | dbSNP | MGI SNP Detail
Chr5:30014685fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPA AAA A C AAAA     AA   AAAA/C
rs46792879
MPD | dbSNP | MGI SNP Detail
Chr5:30014735fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C C CCTC     CC   CCCC/T
rs48265422
MPD | dbSNP | MGI SNP Detail
Chr5:30014939fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Coding-Synonymous
1SNPT TTT T C TTCT     TT   TCTC/T
rs51194345
MPD | dbSNP | MGI SNP Detail
Chr5:30015024fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPA AAA A G AAAA     AA   AAAA/G
rs45846286
MPD | dbSNP | MGI SNP Detail
Chr5:30016206fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNP GC                        C/G
rs47377344 *
MPD | dbSNP | MGI SNP Detail
Chr5:30017012fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : within coordinates of
1SNP  T       T                T
rs33708711
MPD | dbSNP | MGI SNP Detail
Chr5:30017657fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
2SNP AC    C  C                A/C
rs47450682
MPD | dbSNP | MGI SNP Detail
Chr5:30018483fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPA AAA A T AA A     AA   A AA/T
rs49612461
MPD | dbSNP | MGI SNP Detail
Chr5:30018610fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C T CCCC     CC   CCCC/T
rs49140919
MPD | dbSNP | MGI SNP Detail
Chr5:30018898fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPG GGG G G GGGG     GG   GAGA/G
rs47765788
MPD | dbSNP | MGI SNP Detail
Chr5:30018909fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C C CCTC     CC   CTCC/T
rs50049102
MPD | dbSNP | MGI SNP Detail
Chr5:30019226fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPA AAA A G AAGA     AA   AGAA/G
rs46556441
MPD | dbSNP | MGI SNP Detail
Chr5:30019270fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPT TTT T   TTCT     TT   TCTC/T
rs48680521
MPD | dbSNP | MGI SNP Detail
Chr5:30019274fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C T CC C     CC   C TC/T
rs50442964
MPD | dbSNP | MGI SNP Detail
Chr5:30019313fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Intron
1SNPC CCC C C CCTC     CC   CTCC/T
rs52034032
MPD | dbSNP | MGI SNP Detail
Chr5:30019545fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Coding-Synonymous
1SNPC CCC C T CCTC     CC   CTTC/T
rs49542108
MPD | dbSNP | MGI SNP Detail
Chr5:30019978fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPT TTT T A TTTT     TT   TTTA/T
rs46026317
MPD | dbSNP | MGI SNP Detail
Chr5:30020116fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPC CCC C T CCCC     CC   CCCC/T
rs46334055
MPD | dbSNP | MGI SNP Detail
Chr5:30020283fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPT TTT T C TTCT     TT   TCTC/T
rs47976832
MPD | dbSNP | MGI SNP Detail
Chr5:30020429fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : Locus-Region
1SNPA AAA A C AAAA     AA   AAAA/C
rs45963307
MPD | dbSNP | MGI SNP Detail
Chr5:30020501fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 533 bp downstream of
1SNPA AAA A G AAAA     AA   AAAA/G
rs49732976
MPD | dbSNP | MGI SNP Detail
Chr5:30020522fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 554 bp downstream of
1SNPT TTT T C TTTT     TT   TTTC/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs46818819
MPD | dbSNP | MGI SNP Detail
Chr5:30020591fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 623 bp downstream of
1SNPT TTT T T TTAT     TT   TATA/T
rs48265305
MPD | dbSNP | MGI SNP Detail
Chr5:30020707fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 739 bp downstream of
1SNPA AAA A G AAAA     AA   AAAA/G
rs46442865
MPD | dbSNP | MGI SNP Detail
Chr5:30020732fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 764 bp downstream of
1SNPA AAA A A AAAA     AA   AGAA/G
rs49845215
MPD | dbSNP | MGI SNP Detail
Chr5:30020754fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 786 bp downstream of
1SNPT TTT T   TTAT     TT   TAAA/T
rs50603722
MPD | dbSNP | MGI SNP Detail
Chr5:30020830fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 862 bp downstream of
1SNPG GGG G A GGGG     GG   GGGA/G
rs52269049
MPD | dbSNP | MGI SNP Detail
Chr5:30021110fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 1142 bp downstream of
1SNP C                         C
rs33586055
MPD | dbSNP | MGI SNP Detail
Chr5:30021123fDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 1155 bp downstream of
1SNP T     C                   C/T
rs51055185
MPD | dbSNP | MGI SNP Detail
Chr5:30021394rDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 1426 bp downstream of
1SNP CA       C                A/C
rs47162820
MPD | dbSNP | MGI SNP Detail
Chr5:30021398rDel(5D5Mit73-D5Mit351)1J : within coordinates of
Del(5D5Mit73-D5Mit351)5Jcs : within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs : within coordinates of
Il6 : 1430 bp downstream of
1SNP CA       C                A/C

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/09/2014
MGI 5.19
The Jackson Laboratory