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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Ihh Indian hedgehog MGI:96533 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs31014615 MPD | dbSNP | MGI SNP Detail | Chr1:74989963 | f | Ihh : Locus-Region | 1 | SNP | A | C | A | C | A/C | |||||||||||||||||||
| rs31979045 MPD | dbSNP | MGI SNP Detail | Chr1:74990033 | f | Ihh : Locus-Region | 1 | SNP | A | C | A | C | A/C | |||||||||||||||||||
| rs31439235 MPD | dbSNP | MGI SNP Detail | Chr1:74990163 | f | Ihh : Locus-Region | 1 | SNP | A | A | T | A | T | A/T | ||||||||||||||||||
| rs31499586 MPD | dbSNP | MGI SNP Detail | Chr1:74991781 | f | Ihh : Locus-Region | 1 | SNP | G | G | C | G | C/G | |||||||||||||||||||
| rs31996712 MPD | dbSNP | MGI SNP Detail | Chr1:74992044 | f | Ihh : mRNA-UTR | 1 | SNP | G | C | G | C | C/G | |||||||||||||||||||
| rs31565277 MPD | dbSNP | MGI SNP Detail | Chr1:74992050 | f | Ihh : mRNA-UTR | 1 | SNP | G | A | G | A | A/G | |||||||||||||||||||
| rs31676857 MPD | dbSNP | MGI SNP Detail | Chr1:74992083 | f | Ihh : mRNA-UTR | 1 | SNP | G | A | G | A | A/G | |||||||||||||||||||
| rs16785040 MPD | dbSNP | MGI SNP Detail | Chr1:74992393 | f | Ihh : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | T | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C/T | ||
| rs16785041 MPD | dbSNP | MGI SNP Detail | Chr1:74992430 | f | Ihh : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | A/C | ||
| rs16785042 MPD | dbSNP | MGI SNP Detail | Chr1:74992502 | f | Ihh : mRNA-UTR | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C/T | ||
| rs16785043 MPD | dbSNP | MGI SNP Detail | Chr1:74992514 | f | Ihh : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A | A/C | ||
| rs16785044 MPD | dbSNP | MGI SNP Detail | Chr1:74992565 | f | Ihh : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A/G | ||
| rs16785045 MPD | dbSNP | MGI SNP Detail | Chr1:74992579 | f | Ihh : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G/T | ||
| rs16785046 MPD | dbSNP | MGI SNP Detail | Chr1:74992596 | f | Ihh : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||
| rs16785047 MPD | dbSNP | MGI SNP Detail | Chr1:74992740 | f | Ihh : Coding-NonSynonymous | 1 | SNP | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T | T | T | G/T | ||
| rs16793344 MPD | dbSNP | MGI SNP Detail | Chr1:74992933 | f | Ihh : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||
| rs16793345 MPD | dbSNP | MGI SNP Detail | Chr1:74992961 | f | Ihh : Coding-NonSynonymous | 1 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T | T | T | T | T | T | T | T | C/T | ||
| rs16793346 MPD | dbSNP | MGI SNP Detail | Chr1:74993152 | f | Ihh : Coding-Synonymous | 1 | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G/T | ||
| rs16793347 MPD | dbSNP | MGI SNP Detail | Chr1:74993176 | f | Ihh : Coding-Synonymous | 1 | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A/G | ||
| rs16785048 MPD | dbSNP | MGI SNP Detail | Chr1:74993484 | f | Ihh : Intron | 1 | SNP | C | C | T | C | C | T | C | C | C | C | C | C | C/T | |||||||||||
| rs16785049 MPD | dbSNP | MGI SNP Detail | Chr1:74993552 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs16785050 MPD | dbSNP | MGI SNP Detail | Chr1:74993558 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | A/G | ||||||||||
| rs16785051 MPD | dbSNP | MGI SNP Detail | Chr1:74993568 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||||||||
| rs16785052 MPD | dbSNP | MGI SNP Detail | Chr1:74993573 | f | Ihh : Intron | 1 | SNP | T | T | C | T | T | C | T | T | T | T | T | T | T | C/T | ||||||||||
| rs16785053 MPD | dbSNP | MGI SNP Detail | Chr1:74993587 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs16785054 MPD | dbSNP | MGI SNP Detail | Chr1:74993601 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | A/G | |||||||||||
| rs16785055 MPD | dbSNP | MGI SNP Detail | Chr1:74993648 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs16785056 MPD | dbSNP | MGI SNP Detail | Chr1:74993650 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||||||||||
| rs16785057 MPD | dbSNP | MGI SNP Detail | Chr1:74993670 | f | Ihh : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A/G | ||||||||||
| rs16785058 MPD | dbSNP | MGI SNP Detail | Chr1:74993705 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||||||||
| rs16785059 MPD | dbSNP | MGI SNP Detail | Chr1:74993786 | f | Ihh : Intron | 1 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | A/G | |||||||||||
| rs16793348 MPD | dbSNP | MGI SNP Detail | Chr1:74994072 | f | Ihh : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A/C | |||
| rs16793349 MPD | dbSNP | MGI SNP Detail | Chr1:74994175 | f | Ihh : Intron | 1 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A/G | ||
| rs16793350 MPD | dbSNP | MGI SNP Detail | Chr1:74994199 | f | Ihh : Intron | 1 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T | T | T | T | T | T | T | T | C/T | ||
| rs16793351 MPD | dbSNP | MGI SNP Detail | Chr1:74994387 | f | Ihh : Intron | 1 | SNP | T | T | T | T | T | T | G | T | T | T | G | T | T | T | T | T | T | T | T | T | T | G/T | ||
| rs16793352 MPD | dbSNP | MGI SNP Detail | Chr1:74994410 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G/T | ||
| rs16793353 MPD | dbSNP | MGI SNP Detail | Chr1:74994412 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A/G | ||
| rs16793354 MPD | dbSNP | MGI SNP Detail | Chr1:74994427 | f | Ihh : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A | A | A | A/C | ||
| rs16793355 MPD | dbSNP | MGI SNP Detail | Chr1:74994441 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G | ||
| rs31820808 MPD | dbSNP | MGI SNP Detail | Chr1:74994659 | f | Ihh : Intron | 1 | SNP | C | T | C | T | C/T | |||||||||||||||||||
| rs16793356 MPD | dbSNP | MGI SNP Detail | Chr1:74994820 | f | Ihh : Intron | 1 | SNP | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | A/C | |||||||
| rs16793357 MPD | dbSNP | MGI SNP Detail | Chr1:74995083 | f | Ihh : Coding-Synonymous | 1 | SNP | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | ||||||
| rs31906674 MPD | dbSNP | MGI SNP Detail | Chr1:74995212 | f | Ihh : Intron | 1 | SNP | A | C | A | C | A/C | |||||||||||||||||||
| rs31711958 MPD | dbSNP | MGI SNP Detail | Chr1:74996866 | f | Ihh : Intron | 1 | SNP | C | A | C | A | A/C | |||||||||||||||||||
| rs16793336 MPD | dbSNP | MGI SNP Detail | Chr1:74997170 | f | Ihh : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C/T | ||
| rs16793337 MPD | dbSNP | MGI SNP Detail | Chr1:74997178 | f | Ihh : Intron | 2 | SNP | T | G | T | T | T | G | T | G | G | T | T | G | T | G | T | G | T | G | T | G | T | T | G/T | |
| rs16793338 MPD | dbSNP | MGI SNP Detail | Chr1:74997185 | f | Ihh : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | C/T | ||
| rs16793339 MPD | dbSNP | MGI SNP Detail | Chr1:74997208 | f | Ihh : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | A/C | ||
| rs16793340 MPD | dbSNP | MGI SNP Detail | Chr1:74997255 | f | Ihh : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A | A | A/G | ||
| rs16793341 MPD | dbSNP | MGI SNP Detail | Chr1:74997293 | f | Ihh : Intron | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T | T | T | C/T | ||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs16793342 MPD | dbSNP | MGI SNP Detail | Chr1:74997434 | f | Ihh : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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