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Mouse Sequence Query Form
Create customized data sets of mouse sequences by searching sequence attributes, sources, and/or properties of annotated genes and markers. A maximum of 5000 sequences may be returned.
    (sorting and output options can be specified below)
Sequence attributes
Sequence Type:
   		Sequence Provider:
 (You can view the available sequence type and provider combinations)
Description From Sequence Provider: (text search)
(Restricted to sequences associated with mouse genes and markers)
Sequence Length:
bp or aa  (use 'and' if specifying range, e.g., 500 and 1000)
Sequence source
Strain/Species:  (You can browse the strain list)
NOT
 
Clone Collection: (You can view additional details about these collections.)
Tissue:  (You can browse the tissue list)
NOT
Library:  (You can browse the library list)
NOT
Annotated
genes and features
Find sequences associated with different types of markers in MGI.
Marker Symbol/Name:
Search
Type:
NOT
Map position Find sequences associated with mapped genes and markers.
Chromosome:
Cytogenetic Band:
NOT
cM Position:
Genome Coordinates: (from NCBI Build 37)
Gene Ontology (GO) classifications
Find sequences associated with genes annotated with GO classification term(s).
Gene Classifications:  (You can browse the Gene Ontology (GO) Classifications)
Molecular Function Biological Process Cellular Component
Protein domains
Find sequences associated with genes annotated with specific InterPro domains.
InterPro Protein Domains: (You can view all InterPro domains or search for domains at  InterPro/EBI)
Expression Find sequences associated with genes with specific expression data.
Developmental Stage(s):  (You can browse Stage descriptions)
Anatomical Structure(s):  (You can browse the Anatomical Dictionary)
Include: substructures superstructures
Assay Type(s):
Mouse phenotypes & mouse models of human disease
Search by phenotype and/or human disease vocabularies.
Phenotype /Disease: Enter any combination of phenotype terms, disease terms, or IDs
  Hints for:
using AND and OR, quotes, partial word matching, ...
  Select: Anatomical Systems Affected by Phenotypes
  Browse: Full Mammalian Phenotype (MP) Ontology
  Browse: Human Disease (OMIM) Vocabulary
Sorting and
output format
Maximum number of items returned: (5000 or less)
Show in results:(select all)
Sequence Attributes ID Version Type Length Description
Sequence Source Strain/Species Tissue Library Clone Collection
Properties of
Annotated Markers 		Marker Symbol Marker Name Map Position Genome Coordinates
Sort by:
Output format:   

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
07/02/2009
MGI_4.22
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