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Ptprc Gene Detail
 Symbol
Name
ID
Ptprc
protein tyrosine phosphatase, receptor type, C
MGI:97810


Nomenclature History
Synonyms B220, CD45, Ly-5, Lyt-4, T200
Genetic Map
Chromosome 1
74.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 28)

Sequence Map
Chr1:139959992-140071843 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ptprc ± 2 cM)
Protein SuperFamily: leukocyte common antigen
TreeFam: TF351829
Sequences
Representative Sequences Length Strain/Species Flank
genomic 19264 NCBI Gene Model | MGI Sequence Detail 111852 C57BL/6J ± Kb
transcript NM_001111316 RefSeq | MGI Sequence Detail 5664 C57BL/6
polypeptide P06800 UniProt | EBI | MGI Sequence Detail 1291 Not Applicable
For the selected sequences
All sequences(48)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(3) Targeted, other(2) Chemically induced(2)
Homozygous null mutants have defective T-cell maturation. Mice carrying an engineered point mutation exhibit lymphoproliferation and autoimmunity that leads to premature death.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms All PCR and RFLP(13) : PCR(1) RFLP(12) SNPs within 2kb(700 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(49)
Process activation of MAPK activity, B cell differentiation...
Component external side of plasma membrane, focal adhesion...
Function heparan sulfate proteoglycan binding, heparin binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (62 records)
Data Summary: Assays (4)    Results (15)    Tissues (10)    Images (4)
Theiler Stages: 15,16,18,19,20,21,28
  Assay Type Assays   Results
      RT-PCR 1   2
      Immunohistochemistry 3   13
cDNA source data(234)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(254) Genomic(16) cDNA(234) Primer pair(3) Other(1) Antibodies(3)
Microarray probesets(2)
Other database
links
EC 3.1.3.48
Ensembl Gene Model ENSMUSG00000026395
DoTS DT.101192522, DT.101254812, DT.101311356, DT.101319236, DT.101335838, DT.101367407, DT.94206213
UniGene 391573
DFCI TC1573000, TC1592704, TC1605209, TC1614008, TC1666888
NIA Mouse Gene Index U021829
Entrez Gene 19264
International Mouse Knockout Project Status Ptprc
Protein
domains
InterPro ID Description
IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region
IPR003961 Fibronectin, type III
IPR008957 Fibronectin, type III-like fold
IPR016130 Protein-tyrosine phosphatase, active site
IPR016335 Leukocyte common antigen
Graphical View of Protein Domain Structure
References
(Earliest) J:12077 Komuro K et al., "Ly-5: a new lymphocyte antigen system." Immunogenetics 1975;1():452-456
(Latest) J:150308 Vondenhoff MF et al., "LTbetaR signaling induces cytokine expression and up-regulates lymphangiogenic factors in lymph node anlagen." J Immunol 2009 May 1;182(9):5439-45
All references(252)
Other
accession IDs
MGD-MRK-11992, MGD-MRK-12076, MGD-MRK-13679, MGD-MRK-1864, MGI:3584395

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/20/2009
MGI_4.31
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