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Pgk1 Gene Detail
 Symbol
Name
ID
Pgk1
phosphoglycerate kinase 1
MGI:97555


Nomenclature History
STS DXH1,DXMit64
Synonyms Pgk-1
Genetic Map
Chromosome X
45.0 cM, cytoband C-D
Detailed Genetic Map ± 1 cM
 
Mapping data( 63)

Sequence Map
ChrX:103382439-103399038 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; lemur, mouse; pig, domestic; rat; wallaby, tammar    (Mammalian Orthology)
Comparative Map (Mouse/Human Pgk1 ± 2 cM)
Protein SuperFamily: phosphoglycerate kinase
TreeFam: TF300489
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000018277 VEGA Gene Model | MGI Sequence Detail 16600 C57BL/6J ± Kb
transcript NM_008828 RefSeq | MGI Sequence Detail 1816 C57BL/6
polypeptide P09411 UniProt | EBI | MGI Sequence Detail 417 Not Applicable
For the selected sequences
All sequences(45)
Alleles
and
phenotypes
All alleles(1) : Gene trapped(1)
Polymorphisms All PCR and RFLP(8) : PCR(2) RFLP(6) SNPs within 2kb(61 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(8)
Process glycolysis
Component cytoplasm
Function ATP binding, kinase activity...
External Resources: MouseFunc
Expression Literature Summary: (28 records)
Data Summary: Assays (5)    Results (141)    Tissues (108)    Images (21)
Theiler Stages: 21,22,26,28
  Assay Type Assays   Results
      RT-PCR 2   17
      RNA in situ 2   119
      Northern blot 1   5
cDNA source data(18)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(49) Genomic(19) cDNA(22) Primer pair(3) Other(5)
Microarray probesets(4)
Pathways
glycolysis III
gluconeogenesis
glycolysis I
Other database
links
EC 2.7.1.38, 2.7.2.3
Ensembl Gene Model ENSMUSG00000062070
DoTS DT.101239040, DT.103571053, DT.94210531, DT.94210551
DFCI TC1573707
NIA Mouse Gene Index U020126, U044734, U131082, U165094
Entrez Gene 18655
VEGA Gene Model OTTMUSG00000018277
International Mouse Knockout Project Status Pgk1
Protein
domains
InterPro ID Description
IPR001576 Phosphoglycerate kinase
IPR015824 Phosphoglycerate kinase, N-terminal
IPR015901 Phosphoglycerate kinase, C-terminal
IPR015911 Phosphoglycerate kinase, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:5427 Kozak LP et al., "X linkage of phosphoglycerate kinase in the mouse." Biochem Genet 1974 Jan;11(1):41-7
(Latest) J:150959 Kalantry S et al., "Evidence of Xist RNA-independent initiation of mouse imprinted X-chromosome inactivation." Nature 2009 Jul 30;460(7255):647-51
All references(112)
Other
accession IDs
MGD-MRK-13258, MGD-MRK-13266

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory