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Kdr Gene Detail
 Symbol
Name
ID
Kdr
kinase insert domain protein receptor
MGI:96683


Nomenclature History
Synonyms Flk-1, Flk1, vascular endothelial growth factor receptor- 2, VEGF receptor-2, VEGFR-2, VEGFR2
Genetic Map
Chromosome 5
42.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 8)

Sequence Map
Chr5:76328852-76374483 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Kdr ± 2 cM)
Protein SuperFamily: vascular endothelial growth factor receptor
TreeFam: TF325768
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000021297 VEGA Gene Model | MGI Sequence Detail 45632 C57BL/6J ± Kb
transcript NM_010612 RefSeq | MGI Sequence Detail 5464 FVB/N
polypeptide P35918 UniProt | EBI | MGI Sequence Detail 1367 Not Applicable
For the selected sequences
All sequences(26)
Alleles
and
phenotypes
All alleles(10) : Targeted, knock-out(1) Targeted, other(9)
Homozygotes for targeted null mutations exhibit defects in hematopoietic and endothelial cells, impaired liver morphogenesis, and die by embryonic day 9.5.
Polymorphisms RFLP(1) SNPs within 2kb(185 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(39)
Process angiogenesis, branching morphogenesis of a tube...
Component integral to membrane, integral to plasma membrane...
Function ATP binding, growth factor binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (273 records)
Data Summary: Assays (61)    Results (493)    Tissues (249)    Images (146)
Theiler Stages: 8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,26,28
  Assay Type Assays   Results
      Western blot 2   3
      RT-PCR 22   191
      In situ reporter (knock in) 3   27
      RNA in situ 20   178
      Immunohistochemistry 9   48
      Northern blot 4   45
      RNase protection 1   1
cDNA source data(99)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(141) Genomic(8) cDNA(107) Primer pair(14) Other(12) Antibodies(9)
Microarray probesets(2)
Other database
links
EC 2.7.10.1
Ensembl Gene Model ENSMUSG00000062960
DoTS DT.101353935, DT.487855
UniGene 285
DFCI TC1578991, TC1623597
NIA Mouse Gene Index U026313
Entrez Gene 16542
VEGA Gene Model OTTMUSG00000021297
International Mouse Knockout Project Status Kdr
Protein
domains
InterPro ID Description
IPR000719 Protein kinase, catalytic domain
IPR001245 Tyrosine-protein kinase, catalytic domain
IPR001824 Tyrosine-protein kinase, receptor class III, conserved site
IPR003598 Immunoglobulin subtype 2
IPR003599 Immunoglobulin subtype
IPR007110 Immunoglobulin-like
IPR008266 Tyrosine-protein kinase, active site
IPR009134 Tyrosine-protein kinase, vascular endothelial growth factor receptor (VEGFR), N-terminal
IPR009136 Tyrosine-protein kinase, vascular endothelial growth factor receptor 2 (VEGFR2)
IPR011009 Protein kinase-like domain
IPR013098 Immunoglobulin I-set
IPR013106 Immunoglobulin V-set
IPR013151 Immunoglobulin
IPR013783 Immunoglobulin-like fold
IPR017441 Protein kinase, ATP binding site
IPR020635 Tyrosine-protein kinase, subgroup, catalytic domain
Graphical View of Protein Domain Structure
References
(Earliest) J:1615 Matthews W et al., "A receptor tyrosine kinase cDNA isolated from a population of enriched primitive hematopoietic cells and exhibiting close genetic linkage to c-kit." Proc Natl Acad Sci U S A 1991 Oct 15;88(20):9026-30
(Latest) J:154336 Albuquerque RJ et al., "Alternatively spliced vascular endothelial growth factor receptor-2 is an essential endogenous inhibitor of lymphatic vessel growth." Nat Med 2009 Sep;15(9):1023-30
All references(352)
Other
accession IDs
MGD-MRK-11605, MGD-MRK-11606, MGD-MRK-9826, MGD-MRK-9828, MGI:95555

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/20/2009
MGI_4.31
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