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Hoxd13 Gene Detail
 Symbol
Name
ID
Hoxd13
homeobox D13
MGI:96205


Nomenclature History
Synonyms Hox-4.8, spdh
Genetic Map
Chromosome 2
45.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr2:74506367-74509656 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Hoxd13 ± 2 cM)
TreeFam: TF330813
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000013304 VEGA Gene Model | MGI Sequence Detail 3290 C57BL/6J ± Kb
transcript NM_008275 RefSeq | MGI Sequence Detail 2482 C57BL/6
polypeptide P70217 UniProt | EBI | MGI Sequence Detail 339 Not Applicable
For the selected sequences
All sequences(18)
Alleles
and
phenotypes
All alleles(12) : Targeted, knock-out(8) Targeted, other(2) Spontaneous(2)
Homozygotes for targeted and spontaneous mutations exhibit abnormalities of the axial skeleton, especially limbs, and of the male accessory organs, and agenesis of the preputial glands. Mutant males are sterile.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (3)  
Polymorphisms PCR(1) SNPs within 2kb(7 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(31)
Process anterior/posterior pattern formation, branch elongation of an epithelium...
Component nucleus
Function chromatin binding, DNA binding...
External Resources: MouseFunc
Expression Literature Summary: (135 records)
Data Summary: Assays (28)    Results (222)    Tissues (111)    Images (68)
Theiler Stages: 13,14,15,16,17,18,19,20,21,23,24,25,28
  Assay Type Assays   Results
      RT-PCR 3   21
      RNA in situ 24   173
      Immunohistochemistry 1   28
cDNA source data(9)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(33) Genomic(7) cDNA(11) Primer pair(3) Other(12) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000001819
DoTS DT.91327573
UniGene 57227
DFCI TC1599500, TC1616679
NIA Mouse Gene Index U001927
Entrez Gene 15433
VEGA Gene Model OTTMUSG00000013304
International Mouse Knockout Project Status Hoxd13
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:9650 Ryder K et al., "jun-D: a third member of the jun gene family." Proc Natl Acad Sci U S A 1989 Mar;86(5):1500-3
(Latest) J:153164 Cocquempot O et al., "Fork stalling and template switching as a mechanism for polyalanine tract expansion affecting the DYC mutant of HOXD13, a new murine model of synpolydactyly." Genetics 2009 Sep;183(1):23-30
All references(160)
Other
accession IDs
MGD-MRK-10855, MGD-MRK-10906

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory