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Gata3 Gene Detail
 Symbol
Name
ID
Gata3
GATA binding protein 3
MGI:95663


Nomenclature History
Synonyms Gata-3
Genetic Map
Chromosome 2
7.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr2:9778705-9811661 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Gata3 ± 2 cM)
Protein SuperFamily: transcription factor, GATA-1/2/3 types
TreeFam: TF315391
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000011129 VEGA Gene Model | MGI Sequence Detail 32957 C57BL/6J ± Kb
transcript NM_008091 RefSeq | MGI Sequence Detail 3257 C57BL/6
polypeptide P23772 UniProt | EBI | MGI Sequence Detail 443 Not Applicable
For the selected sequences
All sequences(37)
Alleles
and
phenotypes
All alleles(12) : Targeted, knock-out(4) Targeted, other(7) Gene trapped(1)
Homozygous inactivation is embryonic lethal. Embryos exhibit growth retardation, deformities of the brain, spinal cord and inner ear, and impaired fetal liver hematopoiesis. T cell development is impaired when the locus is conditionally inactivated during this process.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms SNPs within 2kb(104 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(22)
Process anatomical structure formation involved in morphogenesis, cell fate determination...
Component nucleus
Function DNA binding, metal ion binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (96 records)
Data Summary: Assays (24)    Results (329)    Tissues (261)    Images (101)
Theiler Stages: 2,3,4,5,12,13,14,15,16,17,18,19,20,21,22,23,24,26,28
  Assay Type Assays   Results
      RT-PCR 5   31
      In situ reporter (knock in) 1   4
      RNA in situ 13   258
      Immunohistochemistry 5   36
cDNA source data(78)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(96) Genomic(7) cDNA(80) Primer pair(6) Other(3) Antibodies(2)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000015619
DoTS DT.101353389, DT.487714, DT.493876
UniGene 313866
PDB 3DFV, 3DFX
DFCI TC1578659
Entrez Gene 14462
VEGA Gene Model OTTMUSG00000011129
International Mouse Knockout Project Status Gata3
Protein
domains
InterPro ID Description
IPR000679 Zinc finger, GATA-type
IPR013088 Zinc finger, NHR/GATA-type
IPR016374 Transcription factor, GATA-1/2/3
Graphical View of Protein Domain Structure
References
(Earliest) J:699 Zon LI et al., "GATA-binding transcription factors in mast cells regulate the promoter of the mast cell carboxypeptidase A gene." J Biol Chem 1991 Dec 5;266(34):22948-53
(Latest) J:153192 Morikawa Y et al., "Characterization of Foxp2-expressing cells in the developing spinal cord." Neuroscience 2009 Sep 15;162(4):1150-62
All references(150)
Other
accession IDs
MGD-MRK-10000, MGD-MRK-10004

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory