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Edn3 Gene Detail
 Symbol
Name
ID
Edn3
endothelin 3
MGI:95285


Nomenclature History
Synonyms 114-CH19, 114CH19, tmgc48
Genetic Map
Chromosome 2
104.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 14)

Sequence Map
Chr2:174586120-174609543 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Edn3 ± 2 cM)
Protein SuperFamily: endothelin
TreeFam: TF333184
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000016515 VEGA Gene Model | MGI Sequence Detail 23424 C57BL/6J ± Kb
transcript NM_007903 RefSeq | MGI Sequence Detail 2963 C57BL/6
polypeptide P48299 UniProt | EBI | MGI Sequence Detail 214 Not Applicable
For the selected sequences
All sequences(25)
Alleles
and
phenotypes
All alleles(4) : Targeted, knock-out(1) Spontaneous(1) Chemically induced(2)
Homozygotes for mutations at this locus exhibit aganglionic megacolon with white spotting of the hair coat due to impaired expansion and differentiation of epidermal melanoblasts. Mutants die around weaning with impacted colons.
Associated Human Diseases (2)   Alleles Annotated to Human Diseases (3)   Phenotype Images (1)  
Polymorphisms PCR(1) SNPs within 2kb(156 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(11)
Process melanocyte differentiation, neural crest cell migration...
Component extracellular region
External Resources: MouseFunc
Expression Literature Summary: (10 records)
Data Summary: Assays (4)    Results (23)    Tissues (18)
Theiler Stages: 18,23,25,26,28
  Assay Type Assays   Results
      RT-PCR 2   16
      Northern blot 2   7
cDNA source data(9)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(14) Genomic(2) cDNA(9) Primer pair(3)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000027524
DoTS DT.101724843, DT.110679948, DT.40162305
DFCI TC1582518, TC1618006
NIA Mouse Gene Index U002932
Entrez Gene 13616
VEGA Gene Model OTTMUSG00000016515
International Mouse Knockout Project Status Edn3
Protein
domains
InterPro ID Description
IPR001928 Endothelin-like toxin
IPR019764 Endothelin-like toxin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:13391 Lyon MF, "brachypody, bp" Mouse News Lett 1958;19():22
(Latest) J:139378 Spencer NJ et al., "Identification of capsaicin-sensitive rectal mechanoreceptors activated by rectal distension in mice." Neuroscience 2008 May 2;153(2):518-34
All references(62)
Other
accession IDs
MGD-MRK-11888, MGD-MRK-9300, MGI:3589218

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory