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Csde1 Gene Detail
 Symbol
Name
ID
Csde1
cold shock domain containing E1, RNA binding
MGI:92356

Nomenclature History
Synonyms D3Jfr1, mKIAA0885, unr
Genetic Map
Chromosome 3
48.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr3:102824554-102862102 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Csde1 ± 2 cM)
TreeFam: TF324707
Sequences
Representative Sequences Length Strain/Species Flank
genomic 229663 NCBI Gene Model | MGI Sequence Detail 37549 C57BL/6J ± Kb
transcript NM_144901 RefSeq | MGI Sequence Detail 4201 C57BL/6
polypeptide Q91W50 UniProt | EBI | MGI Sequence Detail 798 Not Applicable
For the selected sequences
All sequences(64)
Alleles
and
phenotypes 		All alleles(70) : Gene trapped(70)
Polymorphisms SNPs within 2kb(101 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process regulation of transcription, DNA-dependent
Component cytoplasm, mitochondrial inner membrane...
Function DNA binding, nucleic acid binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
cDNA source data(28)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(31) cDNA(31)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000068823
DoTS DT.101196026, DT.111050457, DT.537479, DT.91588243, DT.94229512, DT.94229596, DT.97335435, DT.99869721
Consensus CDS Project CCDS38569.1
DFCI TC1573753, TC1582466, TC1611223, TC1709948
NIA Mouse Gene Index U003654, U119076
Entrez Gene 229663
International Mouse Knockout Project Status Csde1
Protein
domains
InterPro ID Description
IPR002059 Cold-shock protein, DNA-binding
IPR011129 Cold shock protein
IPR016027 Nucleic acid-binding, OB-fold-like
IPR019844 Cold-shock conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:10710 Jeffers M et al., "Characterization of unr; a gene closely linked to N-ras." Nucleic Acids Res 1990 Aug 25;18(16):4891-9
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(10)
Other
accession IDs 		MGD-MRK-6231, MGI:2139611, MGI:2385887
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory