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Col11a2 Gene Detail
 Symbol
Name
ID
Col11a2
collagen, type XI, alpha 2
MGI:88447


Nomenclature History
Genetic Map
Chromosome 17
18.51 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr17:34176382-34203630 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Col11a2 ± 2 cM)
Protein SuperFamily: collagen alpha 1(V) chain
TreeFam: TF323987
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000022512 VEGA Gene Model | MGI Sequence Detail 27249 C57BL/6J ± Kb
transcript NM_009926 RefSeq | MGI Sequence Detail 5605 129/SvJ*
polypeptide Q64739 UniProt | EBI | MGI Sequence Detail 1736 Not Applicable
For the selected sequences
All sequences(21)
Alleles
and
phenotypes
All alleles(2) : Targeted, knock-out(1) Gene trapped(1)
Homozygous mutant animals exhibit reduced body size, short snout, a slightly bulged forehead, deafness, and disorganization of chondrocytes in the growth plate of long bones.
Associated Human Diseases (3)   Alleles Annotated to Human Diseases (1)  
Polymorphisms RFLP(1) SNPs within 2kb(232 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(12)
Process cell adhesion, chondrocyte differentiation...
Component collagen, extracellular region...
Function extracellular matrix structural constituent, structural molecule activity...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (20 records)
Data Summary: Assays (12)    Results (68)    Tissues (21)    Images (13)
Theiler Stages: 9,16,18,20,22,26,28
  Assay Type Assays   Results
      RT-PCR 5   57
      RNA in situ 1   3
      Northern blot 6   8
cDNA source data(42)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(65) Genomic(15) cDNA(44) Primer pair(2) Other(4)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000024330
DoTS DT.101181869, DT.101364782, DT.490296
UniGene 20230
DFCI TC1580463, TC1689139
NIA Mouse Gene Index U017842
Entrez Gene 12815
VEGA Gene Model OTTMUSG00000022512
International Mouse Knockout Project Status Col11a2
Protein
domains
InterPro ID Description
IPR000885 Fibrillar collagen, C-terminal
IPR001791 Laminin G
IPR003129 Laminin G, thrombospondin-type, N-terminal
IPR008160 Collagen triple helix repeat
IPR012680 Laminin G, subdomain 2
Graphical View of Protein Domain Structure
References
(Earliest) J:17944 Hanson IM et al., "Colinearity of novel genes in the class II regions of the MHC in mouse and human." Immunogenetics 1991;34(1):5-11
(Latest) J:142326 Iwai T et al., "Smad7 Inhibits chondrocyte differentiation at multiple steps during endochondral bone formation and down-regulates p38 MAPK pathways." J Biol Chem 2008 Oct 3;283(40):27154-64
All references(38)
Other
accession IDs
MGD-MRK-2054

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory