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F2 Gene Detail
 Symbol
Name
ID
F2
coagulation factor II
MGI:88380


Nomenclature History
Synonyms Cf-2, Cf2, FII, prothrombin, thrombin
Genetic Map
Chromosome 2
47.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr2:91465486-91476564 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human F2 ± 2 cM)
Protein SuperFamily: thrombin
TreeFam: TF327329
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000014282 VEGA Gene Model | MGI Sequence Detail 11079 C57BL/6J ± Kb
transcript NM_010168 RefSeq | MGI Sequence Detail 1988 C57BL/6
polypeptide P19221 UniProt | EBI | MGI Sequence Detail 618 Not Applicable
For the selected sequences
All sequences(18)
Alleles
and
phenotypes
All alleles(6) : Targeted, knock-out(2) Targeted, other(1) Gene trapped(3)
Homozygotes for targeted null mutations exhibit defects in yolk sac vasculature, internal bleeding, tissue necrosis, and die in mid- to late-gestation, or rarely, a few days after birth.
Polymorphisms RFLP(2) SNPs within 2kb(170 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(12)
Process acute-phase response, blood coagulation...
Component extracellular region
Function calcium ion binding, hydrolase activity...
External Resources: MouseFunc
Expression Literature Summary: (8 records)
Data Summary: Assays (5)    Results (22)    Tissues (14)
Theiler Stages: 11,13,15,17,19,20,21,22,24,26,28
  Assay Type Assays   Results
      RT-PCR 5   22
cDNA source data(96)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(102) Genomic(4) cDNA(96) Primer pair(2)
Microarray probesets(2)
Other database
links
EC 3.4.21.5
Ensembl Gene Model ENSMUSG00000027249
DoTS DT.60118651, DT.94208463
UniGene 89048
PDB 2OCV, 2PUX, 2PV9, 3EDX, 3HK3, 3HK6, 3HKI
DFCI TC1577552, TC1605052
NIA Mouse Gene Index U023025
Entrez Gene 14061
VEGA Gene Model OTTMUSG00000014282
International Mouse Knockout Project Status F2
Protein
domains
InterPro ID Description
IPR000001 Kringle
IPR000294 Gamma-carboxyglutamic acid-rich (GLA) domain
IPR001254 Peptidase S1/S6, chymotrypsin/Hap
IPR001314 Peptidase S1A, chymotrypsin
IPR002383 Coagulation factor, Gla domain
IPR003966 Peptidase S1A, prothrombin/thrombin
IPR009003 Serine/cysteine peptidase, trypsin-like
IPR012051 Peptidase S1A, prothrombin
IPR013806 Kringle-like fold
IPR018056 Kringle, conserved site
IPR018059 Kringle, subgroup
IPR018114 Peptidase S1/S6, chymotrypsin/Hap, active site
IPR018992 Thrombin light chain
Graphical View of Protein Domain Structure
References
(Earliest) J:10794 Degen SJ et al., "Characterization of the cDNA coding for mouse prothrombin and localization of the gene on mouse chromosome 2." DNA Cell Biol 1990 Sep;9(7):487-98
(Latest) J:152846 Szabo R et al., "Regulation of cell surface protease matriptase by HAI2 is essential for placental development, neural tube closure and embryonic survival in mice." Development 2009 Aug;136(15):2653-63
All references(26)
Other
accession IDs
MGD-MRK-1946, MGD-MRK-1952

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory