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Cd3d Gene Detail
 Symbol
Name
ID
Cd3d
CD3 antigen, delta polypeptide
MGI:88331


Nomenclature History
STS D9Mit23
Synonyms T3d
Genetic Map
Chromosome 9
26.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 12)

Sequence Map
Chr9:44789964-44794504 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cd3d ± 2 cM)
Protein SuperFamily: T-cell surface glycoprotein CD3 delta chain
TreeFam: TF335892
Sequences
Representative Sequences Length Strain/Species Flank
genomic 12500 NCBI Gene Model | MGI Sequence Detail 4541 C57BL/6J ± Kb
transcript NM_013487 RefSeq | MGI Sequence Detail 1330 C57BL/6
polypeptide P04235 UniProt | EBI | MGI Sequence Detail 173 Not Applicable
For the selected sequences
All sequences(27)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(2) Gene trapped(5)
Homozygotes for targeted null mutations exhibit impaired early thymic development, small numbers of peripheral TCR-alpha/beta+ T cells, and failure of T lymphocyte transition from double-positive to single-positive developmental stages.
Polymorphisms All PCR and RFLP(4) : PCR(3) RFLP(1) SNPs within 2kb(42 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process cell surface receptor linked signal transduction, positive thymic T cell selection...
Component alpha-beta T cell receptor complex, integral to membrane...
Function protein binding, receptor activity...
External Resources: FuncBase
Expression Literature Summary: (1 records)
cDNA source data(15)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(26) Genomic(9) cDNA(15) Primer pair(2)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000032094
DoTS DT.489272
Consensus CDS Project CCDS23124.1
UniGene 4527
DFCI TC1585431, TC1713675
NIA Mouse Gene Index U010405
Entrez Gene 12500
International Mouse Knockout Project Status Cd3d
Protein
domains
InterPro ID Description
IPR003110 Phosphorylated immunoreceptor signaling ITAM
IPR013783 Immunoglobulin-like fold
IPR015484 CD3 protein, gamma/delta subunit
IPR015485 CD3 signaling complex delta subunit
Graphical View of Protein Domain Structure
References
(Earliest) J:7832 van den Elsen P et al., "Isolation and characterization of a cDNA clone encoding the murine homologue of the human 20K T3/T-cell receptor glycoprotein." Nature 1985 Apr 11-17;314(6011):542-4
(Latest) J:155472 Brodeur JF et al., "Expression of fully assembled TCR-CD3 complex on double positive thymocytes: synergistic role for the PRS and ER retention motifs in the intra-cytoplasmic tail of CD3epsilon." Int Immunol 2009 Dec;21(12):1317-27
All references(36)
Other
accession IDs
MGD-MRK-14696, MGD-MRK-1852

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/06/2010
MGI_4.32
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