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Atcay Gene Detail
 Symbol
Name
ID
Atcay
ataxia, cerebellar, Cayman type homolog (human)
MGI:2448730


Nomenclature History
Synonyms 3322401A10Rik, BNIP-H, ji
Genetic Map
Chromosome 10
43.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 10)

Sequence Map
Chr10:80667253-80693578 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Atcay ± 2 cM)
TreeFam: TF324164
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000030319 VEGA Gene Model | MGI Sequence Detail 26326 C57BL/6J ± Kb
transcript NM_178662 RefSeq | MGI Sequence Detail 3677 C57BL/6
polypeptide Q8BHE3 UniProt | EBI | MGI Sequence Detail 372 Not Applicable
For the selected sequences
All sequences(23)
Alleles
and
phenotypes
All alleles(6) : Gene trapped(1) Spontaneous(4) Chemically induced(1)
Mutants homozygous for a severe allele show progressive impaired coordination and seizures beginning by 10-16 days of age and die by 4 weeks of age. Homozygotes for milder alleles have abnormal gait, slightly diminished body size and reduced male fertility.
Polymorphisms SNPs within 2kb(65 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(1)
Process transport
External Resources: MouseFunc
Expression Literature Summary: (1 records)
Data Summary: Assays (2)    Results (18)    Tissues (9)    Images (3)
Theiler Stages: 24,28
  Assay Type Assays   Results
      RNA in situ 1   9
      Northern blot 1   9
cDNA source data(47)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(48) cDNA(48)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000034958
DoTS DT.91321000
UniGene 127681
DFCI TC1574224
NIA Mouse Gene Index U032038
Entrez Gene 16467
VEGA Gene Model OTTMUSG00000030319
International Mouse Knockout Project Status Atcay
Protein
domains
InterPro ID Description
IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal
Graphical View of Protein Domain Structure
References
(Earliest) J:300 Snell GD, "Linkage of jittery and waltzing in the mouse" J Hered 1945;36():279-80
(Latest) J:149430 Concepcion D et al., "Multipotent genetic suppression of retrotransposon-induced mutations by Nxf1 through fine-tuning of alternative splicing." PLoS Genet 2009 May;5(5):e1000484
All references(15)
Other
accession IDs
MGD-MRK-10693, MGD-MRK-11529, MGI:2143893, MGI:2442176, MGI:96640

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory