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Picalm Gene Detail
 Symbol
Name
ID
Picalm
phosphatidylinositol binding clathrin assembly protein
MGI:2385902

Nomenclature History
Synonyms fit-1, fit1, MGC:19382, MGC:36413, MGC:36616
Genetic Map
Chromosome 7
47.2 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr7:97278742-97357442 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Picalm ± 2 cM)
TreeFam: TF314861
Sequences
Representative Sequences Length Strain/Species Flank
genomic 233489 NCBI Gene Model | MGI Sequence Detail 78701 C57BL/6J ± Kb
transcript NM_146194 RefSeq | MGI Sequence Detail 3659 C57BL/6
polypeptide Q7M6Y3 UniProt | EBI | MGI Sequence Detail 660 Not Applicable
For the selected sequences
All sequences(40)
Alleles
and
phenotypes 		All alleles(30) : Gene trapped(25) Chemically induced(5)
Polymorphisms SNPs within 2kb(346 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process axonogenesis, clathrin coat assembly...
Component clathrin coat, coated pit...
Function clathrin binding, phosphatidylinositol binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (1)    Results (2)    Tissues (1)
Theiler Stages: 26
  Assay Type Assays   Results
      RT-PCR 1   2
cDNA source data(11)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(17) Genomic(2) cDNA(12) Primer pair(1) Other(2)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000039361
DoTS DT.101409122, DT.101409127, DT.97338241, DT.97338246
DFCI TC1574607, TC1588708, TC1590729, TC1594219, TC1596192, TC1627680
NIA Mouse Gene Index U008359, U352956
Entrez Gene 233489
International Mouse Knockout Project Status Picalm
Protein
domains
InterPro ID Description
IPR008942 ENTH/VHS
IPR011417 ANTH
IPR013809 Epsin-like, N-terminal
IPR014712 Clathrin adaptor, phosphoinositide-binding, GAT-like
Graphical View of Protein Domain Structure
References
(Earliest) J:10283 Rinchik EM et al., "A strategy for fine-structure functional analysis of a 6- to 11-centimorgan region of mouse chromosome 7 by high-efficiency mutagenesis." Proc Natl Acad Sci U S A 1990 Feb;87(3):896-900
(Latest) J:156045 Bushlin I et al., "Clathrin assembly protein AP180 and CALM differentially control axogenesis and dendrite outgrowth in embryonic hippocampal neurons." J Neurosci 2008 Oct 8;28(41):10257-71
All references(19)
Other
accession IDs 		MGD-MRK-9805, MGD-MRK-9806, MGI:95538
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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