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Cln6 Gene Detail
 Symbol
Name
ID
Cln6
ceroid-lipofuscinosis, neuronal 6
MGI:2159324


Nomenclature History
Synonyms 1810065L06Rik, D9Bwg1455e
Genetic Map
Chromosome 9
35.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr9:62686592-62699813 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cln6 ± 2 cM)
TreeFam: TF333294
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000033326 VEGA Gene Model | MGI Sequence Detail 13222 C57BL/6J ± Kb
transcript NM_001033175 RefSeq | MGI Sequence Detail 2136 NOD
polypeptide NP_001028347 RefSeq | MGI Sequence Detail 308 NOD
For the selected sequences
All sequences(34)
Alleles
and
phenotypes
All alleles(6) : Gene trapped(5) Spontaneous(1)
Homozygous mutants have progressive retinal atrophy, limb paralysis, and seizures that lead to early death.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms SNPs within 2kb(21 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(12)
Process cellular macromolecule catabolic process, cholesterol metabolic process...
Component endoplasmic reticulum, endoplasmic reticulum lumen...
Function protein homodimerization activity
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (1 records)
Data Summary: Assays (1)    Results (13)    Tissues (9)    Images (7)
Theiler Stages: 20,22,24,26,28
  Assay Type Assays   Results
      RNA in situ 1   13
cDNA source data(6)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(8) cDNA(7) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000032245
DoTS DT.110644527, DT.531732, DT.94375608
DFCI TC1577242
NIA Mouse Gene Index U010600
Entrez Gene 76524
VEGA Gene Model OTTMUSG00000033326
International Mouse Knockout Project Status Cln6
References
(Earliest) J:44483 Brady KP et al., "Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis." Genome Res 1997 Nov;7(11):1085-93
(Latest) J:153101 Kielar C et al., "Molecular correlates of axonal and synaptic pathology in mouse models of Batten disease." Hum Mol Genet 2009 Nov 1;18(21):4066-80
All references(15)
Other
accession IDs
MGD-MRK-34102, MGI:106408, MGI:1202067, MGI:1923774, MGI:2143349

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory