About   Help   FAQ
Pldn Gene Detail
 Symbol
Name
ID
Pldn
pallidin
MGI:1927580


Nomenclature History
Synonyms BLOC-1, BLOC-1 subunit
Genetic Map
Chromosome 2
67.6 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 54)

Sequence Map
Chr2:122564239-122575211 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Pldn ± 2 cM)
Protein SuperFamily: BLOC-1 complex, pallidin subunit
TreeFam: TF328390
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000015683 VEGA Gene Model | MGI Sequence Detail 10973 C57BL/6J ± Kb
transcript NM_019788 RefSeq | MGI Sequence Detail 3494 C57BL/6
polypeptide Q9R0C0 UniProt | EBI | MGI Sequence Detail 172 Not Applicable
For the selected sequences
All sequences(33)
Alleles
and
phenotypes
All alleles(3) : Gene trapped(2) Spontaneous(1)
Mutations at this locus result in a coat color abnormality, abnormal platelet morphology, age related lung abnormalities, decreased ssurvival, and impaired motor coordination.
Associated Human Diseases (3)   Alleles Annotated to Human Diseases (1)   Phenotype Images (1)  
Polymorphisms SNPs within 2kb(78 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(11)
Process blood coagulation, melanocyte differentiation...
Component cytoplasm, endosome...
External Resources: MouseFunc
Expression cDNA source data(54)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(55) Genomic(1) cDNA(54)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000005804
DoTS DT.87072417, DT.97368848
UniGene 268921
DFCI TC1575682, TC1635761
NIA Mouse Gene Index U042356
Entrez Gene 18457
VEGA Gene Model OTTMUSG00000015683
International Mouse Knockout Project Status Pldn
Protein
domains
InterPro ID Description
IPR017242 BLOC-1 complex, pallidin subunit
Graphical View of Protein Domain Structure
References
(Earliest) J:13138 Roberts E, "A new mutation in the house mouse (Mus musculus)." Science 1931;74():569
(Latest) J:149897 Yoshida M et al., "Functional evaluation of pallid mice with genetic emphysema." Lab Invest 2009 Jul;89(7):760-8
All references(93)
Other
accession IDs
MGD-MRK-13119, MGI:97468

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/20/2009
MGI_4.31
Web browser compatibility
The Jackson Laboratory