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Barhl1 Gene Detail
 Symbol
Name
ID
Barhl1
BarH-like 1 (Drosophila)
MGI:1859288


Nomenclature History
Synonyms Dres115, MBH2
Genetic Map
Chromosome 2
17.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr2:28763199-28772188 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Barhl1 ± 2 cM)
TreeFam: TF316128
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000011821 VEGA Gene Model | MGI Sequence Detail 8990 C57BL/6J ± Kb
transcript NM_019446 RefSeq | MGI Sequence Detail 3674 -
polypeptide P63157 UniProt | EBI | MGI Sequence Detail 327 Not Applicable
For the selected sequences
All sequences(27)
Alleles
and
phenotypes
All alleles(1) : Targeted, other(1)
Homozygous mutation of this gene results in progressive hearing loss starting at 2 weeks of age. Animals are completely deaf by 10 months of age and show degeneration of the inner and outer cochlear hair cells.
Polymorphisms RFLP(1) SNPs within 2kb(4 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(15)
Process midbrain development, negative regulation of neuron apoptosis...
Component nucleus
Function DNA binding, sequence-specific DNA binding...
External Resources: MouseFunc
Expression Literature Summary: (21 records)
Data Summary: Assays (5)    Results (59)    Tissues (47)    Images (7)
Theiler Stages: 17,20,21,22,24,28
  Assay Type Assays   Results
      RNA in situ 5   59
cDNA source data(9)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(10) cDNA(9) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000026805
DoTS DT.101725824, DT.60102816, DT.94233594, DT.94233596, DT.97359418
UniGene 21390
DFCI TC1584807, TC1682630
NIA Mouse Gene Index U022456
Entrez Gene 54422
VEGA Gene Model OTTMUSG00000011821
International Mouse Knockout Project Status Barhl1
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR009057 Homeodomain-like
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
IPR020479 Homeobox, region
Graphical View of Protein Domain Structure
References
(Earliest) J:62505 Bulfone A et al., "Barhl1, a gene belonging to a new subfamily of mammalian homeobox genes, is expressed in migrating neurons of the CNS" Hum Mol Genet 2000 May 22;9(9):1443-52
(Latest) J:149543 Zhu Y et al., "SDF1/CXCR4 signalling regulates two distinct processes of precerebellar neuronal migration and its depletion leads to abnormal pontine nuclei formation." Development 2009 Jun;136(11):1919-28
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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