About   Help   FAQ
Socs1 Gene Detail
 Symbol
Name
ID
Socs1
suppressor of cytokine signaling 1
MGI:1354910


Nomenclature History
Synonyms Cish1, Cish7, JAB, JAK-binding protein, JAK2-binding protein, SOCS-1, SSI-1, STAT-induced STAT inhibitor 1
Genetic Map
Chromosome 16
3.4 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr16:10783901-10785629 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Socs1 ± 2 cM)
Protein SuperFamily: suppressor of cytokine signaling (SOCS) 1-3
TreeFam: TF321368
Sequences
Representative Sequences Length Strain/Species Flank
genomic 12703 NCBI Gene Model | MGI Sequence Detail 1729 C57BL/6J ± Kb
transcript NM_009896 RefSeq | MGI Sequence Detail 1220 C57BL/6
polypeptide O35716 UniProt | EBI | MGI Sequence Detail 212 Not Applicable
For the selected sequences
All sequences(20)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(4) Targeted, other(3)
Homozygotes for targeted null mutations exhibit retarded growth, hyperresponsiveness to endogenous interferon gamma, hepatitis with fatty degeneration, lymphopenia due to excess apoptosis, monocytic organ infiltration, and lethality by 3 weeks of age.
Phenotype Images (2)  
Polymorphisms SNPs within 2kb(64 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process cytokine-mediated signaling pathway, fat cell differentiation...
Component cellular_component
Function kinase inhibitor activity, protein binding...
External Resources: FuncBase
Expression Literature Summary: (3 records)
cDNA source data(53)
External Resources: GEO  ArrayExpress 
Molecular
reagents
All nucleic(55) Genomic(1) cDNA(54)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000038037
DoTS DT.101724753, DT.535536
Consensus CDS Project CCDS27952.1
UniGene 130
DFCI TC1577255
NIA Mouse Gene Index U036782
Entrez Gene 12703
International Mouse Knockout Project Status Socs1
Protein
domains
InterPro ID Description
IPR000980 SH2 motif
IPR001496 SOCS protein, C-terminal
Graphical View of Protein Domain Structure
References
(Earliest) J:30554 Schluter G et al., "Sequence analysis of the conserved protamine gene cluster shows that it contains a fourth expressed gene." Mol Reprod Dev 1996 Jan;43(1):1-6
(Latest) J:155447 Calabrese V et al., "SOCS1 links cytokine signaling to p53 and senescence." Mol Cell 2009 Dec 11;36(5):754-67
All references(96)
Other
accession IDs
MGI:1276585

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
02/06/2010
MGI_4.32
Web browser compatibility
The Jackson Laboratory