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Shroom3 Gene Detail
 Symbol
Name
ID
Shroom3
shroom family member 3
MGI:1351655


Nomenclature History
Synonyms D5Ertd287e, Shrm, Shrm3
Genetic Map
Chromosome 5
52.0 cM, cytoband E3
Detailed Genetic Map ± 1 cM
 
Mapping data( 6)

Sequence Map
Chr5:93112461-93394785 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Shroom3 ± 2 cM)
TreeFam: TF333370
Sequences
Representative Sequences Length Strain/Species Flank
genomic 27428 NCBI Gene Model | MGI Sequence Detail 282325 C57BL/6J ± Kb
transcript NM_015756 RefSeq | MGI Sequence Detail 7210 C57BL/6
polypeptide Q9QXN0 UniProt | EBI | MGI Sequence Detail 1986 Not Applicable
For the selected sequences
All sequences(39)
Alleles
and
phenotypes
All alleles(138) : Gene trapped(138)
Homozygous mutation of this locus results in failed neural tube closure leading to exencephaly, acrania, facial clefting, and spina bifida. Homozygotes develop to term but die either at birth or shortly thereafter.
Polymorphisms SNPs within 2kb(1616 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(16)
Process actin cytoskeleton organization, columnar/cuboidal epithelial cell development...
Component adherens junction, apical junction complex...
Function actin binding, protein binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (3 records)
Data Summary: Assays (3)    Results (62)    Tissues (31)    Images (1)
Theiler Stages: 11,12,13,15,17,18,20,22
  Assay Type Assays   Results
      Western blot 1   2
      In situ reporter (knock in) 1   54
      RNA in situ 1   6
cDNA source data(72)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(74) cDNA(73) Primer pair(1) Antibodies(1)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000029381
UniGene 46014
DFCI TC1594807, TC1597093, TC1600114, TC1606407, TC1610610, TC1663563, TC1675385
NIA Mouse Gene Index U005809
Entrez Gene 27428
International Mouse Knockout Project Status Shroom3
Protein
domains
InterPro ID Description
IPR001478 PDZ/DHR/GLGF
IPR014799 Apx/shroom, ASD2
IPR014800 Apx/shroom, ASD1
Graphical View of Protein Domain Structure
References
(Earliest) J:58691 Hildebrand JD et al., "Shroom, a PDZ domain-containing actin-binding protein, is required for neural tube morphogenesis in mice." Cell 1999 Nov 24;99(5):485-97
(Latest) J:135984 Nishimura T et al., "Shroom3-mediated recruitment of Rho kinases to the apical cell junctions regulates epithelial and neuroepithelial planar remodeling." Development 2008 Apr;135(8):1493-502
All references(16)
Other
accession IDs
MGI:1098648, MGI:2141015

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory