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Foxc1 Gene Detail
 Symbol
Name
ID
Foxc1
forkhead box C1
MGI:1347466


Nomenclature History
Synonyms fkh-1, Fkh1, fkh1, FREAC3, frkhda, Mf1, Mf4
Genetic Map
Chromosome 13
20.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 13)

Sequence Map
Chr13:31898560-31902512 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee    (Mammalian Orthology)
Comparative Map (Mouse/Human Foxc1 ± 2 cM)
TreeFam: TF316127
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000000725 VEGA Gene Model | MGI Sequence Detail 3953 C57BL/6J ± Kb
transcript NM_008592 RefSeq | MGI Sequence Detail 3990 -
polypeptide Q61572 UniProt | EBI | MGI Sequence Detail 553 Not Applicable
For the selected sequences
All sequences(23)
Alleles
and
phenotypes
All alleles(4) : Targeted, other(2) Spontaneous(1) Chemically induced(1)
Homozygous mutants are neonatal lethal with congenital hydrocephalus, edema, abnormalities of the eye, skull, axial skeleton, kidney-ureter and cardiovascular systems. Heterozygotes have variable milder defects depending on genetic background.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)   Phenotype Images (3)  
Polymorphisms All PCR and RFLP(2) : PCR(1) RFLP(1)
Gene Ontology
(GO)
classifications
All GO classifications(49)
Process anti-apoptosis, artery morphogenesis...
Component nucleus
Function DNA bending activity, DNA binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (44 records)
Data Summary: Assays (18)    Results (171)    Tissues (124)    Images (39)
Theiler Stages: 10,11,12,13,14,15,17,18,19,20,21,22,23,24,26,28
  Assay Type Assays   Results
      RNA in situ 9   98
      Northern blot 5   34
      RNase protection 4   39
cDNA source data(37)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(51) Genomic(8) cDNA(38) Primer pair(2) Other(3)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000050295
DoTS DT.101346600, DT.485929, DT.94354889
UniGene 12949
DFCI TC1580884, TC1662755, TC1668582
NIA Mouse Gene Index U014701
Entrez Gene 17300
VEGA Gene Model OTTMUSG00000000725
International Mouse Knockout Project Status Foxc1
Protein
domains
InterPro ID Description
IPR001766 Transcription factor, fork head
IPR011991 Winged helix repressor DNA-binding
IPR018122 Transcription factor, fork head, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:75733 Gruneberg H, "Congenital hydrocephalus in the mouse, a case of spurious pleiotropism" J Genet 1943;45(1):1-21
(Latest) J:152710 Aldinger KA et al., "FOXC1 is required for normal cerebellar development and is a major contributor to chromosome 6p25.3 Dandy-Walker malformation." Nat Genet 2009 Sep;41(9):1037-42
All references(79)
Other
accession IDs
MGD-MRK-16690, MGD-MRK-1966, MGD-MRK-24021, MGD-MRK-35060, MGD-MRK-9813, MGI:103155, MGI:88391, MGI:95544

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/20/2009
MGI_4.31
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