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Csf2 Gene Detail
 Symbol
Name
ID
Csf2
colony stimulating factor 2 (granulocyte-macrophage)
MGI:1339752


Nomenclature History
Synonyms Csfgm, Gm-CSf, MGI-IGM
Genetic Map
Chromosome 11
29.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 60)

Sequence Map
Chr11:54060773-54063169 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; horse; pig, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Csf2 ± 2 cM)
Protein SuperFamily: granulocyte-macrophage colony-stimulating factor
TreeFam: TF338611
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000005663 VEGA Gene Model | MGI Sequence Detail 2397 C57BL/6J ± Kb
transcript NM_009969 RefSeq | MGI Sequence Detail 1033 C57BL/6
polypeptide P01587 UniProt | EBI | MGI Sequence Detail 141 Not Applicable
For the selected sequences
All sequences(23)
Alleles
and
phenotypes
All alleles(3) : Targeted, knock-out(2) Targeted, other(1)
Homozygotes for targeted null mutations exhibit lung abnormalities with lymphocytic infiltration and accumulation of surfactant lipids. Litter sizes from homozygous breeding pairs are smaller at weaning due to perinatal mortality.
Associated Human Diseases (3)   Alleles Annotated to Human Diseases (3)  
Polymorphisms All PCR and RFLP(16) : PCR(9) RFLP(7) SNPs within 2kb(62 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process immune response, myeloid dendritic cell differentiation...
Component extracellular region, extracellular space...
Function cytokine activity, granulocyte macrophage colony-stimulating factor receptor binding...
External Resources: FuncBase
Expression Literature Summary: (7 records)
Data Summary: Assays (4)    Results (42)    Tissues (26)
Theiler Stages: 1,2,3,5,21,22,23,24,25,26,28
  Assay Type Assays   Results
      RT-PCR 3   36
      Nuclease S1 1   6
cDNA source data(12)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(36) Genomic(14) cDNA(12) Primer pair(7) Other(3)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000018916
DoTS DT.40147424, DT.97391975
Consensus CDS Project CCDS24692.1
UniGene 4922
DFCI TC1589011
NIA Mouse Gene Index U032776
Entrez Gene 12981
VEGA Gene Model OTTMUSG00000005663
International Mouse Knockout Project Status Csf2
Protein
domains
InterPro ID Description
IPR000773 Granulocyte-macrophage colony-stimulating factor
IPR009079 Four-helical cytokine-like, core
Graphical View of Protein Domain Structure
References
(Earliest) J:7492 Gough NM et al., "Molecular cloning of cDNA encoding a murine haematopoietic growth regulator, granulocyte-macrophage colony stimulating factor." Nature 1984 Jun 28-Jul 4;309(5971):763-7
(Latest) J:155684 Dolcetti L et al., "Hierarchy of immunosuppressive strength among myeloid-derived suppressor cell subsets is determined by GM-CSF." Eur J Immunol 2010 Jan;40(1):22-35
All references(228)
Other
accession IDs
MGD-MRK-2187, MGI:88531

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory