About   Help   FAQ
Ctbp1 Gene Detail
 Symbol
Name
ID
Ctbp1
C-terminal binding protein 1
MGI:1201685


Nomenclature History
Synonyms BARS, CtBP1-L, CtBP1-S, CtBP3/BARS, D4S115h, D5H4S115, D5H4S115E
Genetic Map
Chromosome 5
19.0 cM, cytoband B1
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr5:33590403-33617610 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ctbp1 ± 2 cM)
Protein SuperFamily: phosphoglycerate dehydrogenase
TreeFam: TF313593
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000037373 Ensembl Gene Model | MGI Sequence Detail 27208 C57BL/6J ± Kb
transcript NM_013502 RefSeq | MGI Sequence Detail 2254 C57BL/6
polypeptide O88712 UniProt | EBI | MGI Sequence Detail 441 Not Applicable
For the selected sequences
All sequences(43)
Alleles
and
phenotypes
All alleles(6) : Targeted, knock-out(1) Gene trapped(5)
Polymorphisms RFLP(6) SNPs within 2kb(90 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (21 annotations)
Process cell differentiation, metabolic process...
Component cytoplasm, nucleus...
Function binding, catalytic activity...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (2)    Results (14)    Tissues (13)
Theiler Stages: 15,17,19,20,28
  Assay Type Assays   Results
      RNA in situ 1   4
      Northern blot 1   10
cDNA source data(205)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(207) cDNA(207)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000037373
DoTS DT.101399082, DT.110656934, DT.94340736, DT.94355083, DT.94355084, DT.99862694
Consensus CDS Project CCDS19201.1
UniGene 7286
DFCI TC1572443
NIA Mouse Gene Index U026084
Entrez Gene 13016
International Mouse Knockout Project Status Ctbp1
Protein
domains
InterPro ID Description
IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
IPR016040 NAD(P)-binding domain
Graphical View of Protein Domain Structure
References
(Earliest) J:496 Koizumi T et al., "Linkage, but not gene order, of homologous loci, including alpha-L-iduronidase (Idua), is conserved in the Huntington disease region of the mouse and human genomes." Mamm Genome 1992;3(1):23-7
(Latest) J:153416 Kajimura S et al., "Regulation of the brown and white fat gene programs through a PRDM16/CtBP transcriptional complex." Genes Dev 2008 May 15;22(10):1397-409
All references(21)
Other
accession IDs
MGD-MRK-16717, MGD-MRK-6985, MGD-MRK-7054, MGI:93155

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
02/06/2010
MGI_4.32
Web browser compatibility
The Jackson Laboratory