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Scg2 Gene Detail
 Symbol
Name
ID
Scg2
secretogranin II
MGI:103033


Nomenclature History
Synonyms Chgc, SgII
Genetic Map
Chromosome 1
43.6 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr1:79431244-79436665 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Scg2 ± 2 cM)
Protein SuperFamily: secretogranin II
TreeFam: TF334018
Sequences
Representative Sequences Length Strain/Species Flank
genomic 20254 NCBI Gene Model | MGI Sequence Detail 5422 C57BL/6J ± Kb
transcript NM_009129 RefSeq | MGI Sequence Detail 2485 C57BL/6
polypeptide Q03517 UniProt | EBI | MGI Sequence Detail 617 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes
All alleles(1) : Targeted, knock-out(1)
Polymorphisms All PCR and RFLP(2) : PCR(1) RFLP(1) SNPs within 2kb(38 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(5)
Process angiogenesis, MAPKKK cascade...
Component extracellular region
Function calcium ion binding, cytokine activity...
External Resources: MouseFunc
Expression Literature Summary: (9 records)
Data Summary: Assays (8)    Results (244)    Tissues (147)    Images (26)
Theiler Stages: 22,23,24,26,28
  Assay Type Assays   Results
      Western blot 1   2
      RT-PCR 3   138
      RNA in situ 4   104
cDNA source data(51)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(57) Genomic(1) cDNA(53) Primer pair(3) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000050711
DoTS DT.103583231, DT.50316038
UniGene 5038
DFCI TC1578636, TC1599210
NIA Mouse Gene Index U021514
Entrez Gene 20254
International Mouse Knockout Project Status Scg2
Protein
domains
InterPro ID Description
IPR001990 Chromogranin/secretogranin
IPR018054 Chromogranin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:36350 Eiden LE et al., "A nomenclature proposal for the chromogranin/secretogranin proteins." Neuroscience 1987 Jun;21(3):1019-21
(Latest) J:139177 Hoffman BG et al., "Identification of transcripts with enriched expression in the developing and adult pancreas." Genome Biol 2008;9(6):R99
All references(20)
Other
accession IDs
MGD-MRK-1971, MGD-MRK-23870

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory