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Foxn1 Gene Detail
 Symbol
Name
ID
Foxn1
forkhead box N1
MGI:102949


Nomenclature History
Synonyms D11Bhm185e, Hfh11, whn
Genetic Map
Chromosome 11
45.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 23)

Sequence Map
Chr11:78171079-78200060 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Foxn1 ± 2 cM)
TreeFam: TF329867
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000000142 VEGA Gene Model | MGI Sequence Detail 28982 C57BL/6J ± Kb
transcript NM_008238 RefSeq | MGI Sequence Detail 2503 BALB/c
polypeptide Q61575 UniProt | EBI | MGI Sequence Detail 648 Not Applicable
For the selected sequences
All sequences(22)
Alleles
and
phenotypes
All alleles(16) : Targeted, knock-out(1) Targeted, other(5) Gene trapped(4) Spontaneous(6)
Homozygotes for different mutations have in genetically determined absence or loss of hair and failed hair keratinization, premature lethality (differing by genetic background) and absence of thymus, resulting in multiple immune abnormalities. Heterozygotes have enlarged thymuses.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (3)   Phenotype Images (4)  
Polymorphisms PCR(3) SNPs within 2kb(18 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(10)
Process keratinocyte differentiation, multicellular organismal development...
Component nucleus
Function DNA binding, sequence-specific DNA binding...
External Resources: MouseFunc
Expression Literature Summary: (27 records)
Data Summary: Assays (12)    Results (67)    Tissues (35)    Images (13)
Theiler Stages: 12,14,16,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      Western blot 1   6
      RT-PCR 4   31
      RNA in situ 4   18
      Immunohistochemistry 2   10
      Northern blot 1   2
cDNA source data(8)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(33) Genomic(18) cDNA(8) Primer pair(5) Other(2) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000002057
DoTS DT.524482
DFCI TC1589791, TC1712018, TC1725890
NIA Mouse Gene Index U033130
Entrez Gene 15218
VEGA Gene Model OTTMUSG00000000142
International Mouse Knockout Project Status Foxn1
Protein
domains
InterPro ID Description
IPR001766 Transcription factor, fork head
IPR011991 Winged helix repressor DNA-binding
IPR018122 Transcription factor, fork head, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:2484 Truslove GM, "Genetical studies on the skeleton of the mouse. V. 'Interfrontal' and 'parted frontals'" J Genet 1952;51():115-122
(Latest) J:154156 Bressenot A et al., "Assessment of apoptosis by immunohistochemistry to active caspase-3, active caspase-7, or cleaved PARP in monolayer cells and spheroid and subcutaneous xenografts of human carcinoma." J Histochem Cytochem 2009 Apr;57(4):289-300
All references(340)
Other
accession IDs
MGD-MRK-12946, MGD-MRK-23783, MGD-MRK-35270, MGI:106810

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory