GXD collects and integrates the gene expression information in MGI.
Its primary emphasis is on endogenous gene expression during mouse development.
- How do I...
- .. find expression data for a specific gene and tissue?
- .. find expression data for a tissue during development?
- .. find genes expressed in one tissue but not another?
- .. interpret the results of my expression search?
- .. find references that report expression data for a gene at a specific age?
- Genes studied in expression references
- Genes with expression assay results
- Expression assay results
- Expression images
- Expression assays
- Mouse mutants with expression data
Gene Expression News
May 28, 2015
- GXD has added links to expression data from chicken (GEISHA), Xenopus (Xenbase) and zebrafish (ZFIN), enabling the gene-based comparison of expression information between mouse and these species. The links are displayed in the Expression section of MGI gene detail pages, in Other vertebrates links. For an example see the Pax6 Gene Detail page. Gene orthology assertions are as provided by GEISHA, Xenbase, and ZFIN.
- Two interactive matrix views have been developed to provide users with intuitive, high-level summaries of expression data and from where they can easily move to levels of greater detail. The tissue-by-developmental stage matrix provides global overviews of the spatio-temporal expression patterns of genes. The tissue-by-gene matrix enables a comparison of expression patterns between genes. Both types of matrices can be expanded (and collapsed) along the tissue axis, based on the hierarchical organization of the anatomy. Rows and columns in the matrices can be selected to refine the data set. The matrices have been added as new tabs to the gene expression data summaries. These matrices can be accessed by searches using the Gene Expression Data Query and via links from the Mouse Developmental Anatomy Browser.
- The Gene Expression Data Matrix is now accessible from the Access Data section of this page. It returns all of GXD's expression data in a tissue-by-developmental stage matrix. When using this matrix, users start with a high-level overview of GXD's data and then can interactively view and select expression data for the specific tissues and / or developmental stages of interest.