The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression data and makes these data freely available in formats appropriate for comprehensive analysis. There is particular emphasis on endogenous gene expression during mouse development. The project is funded by NIH/NICHD grant HD062499.
This page provides information about:
New expression data are made available on a weekly basis. These data are acquired from the literature by our curatorial staff and via electronic submission. GXD encourages researchers to submit their expression data to us. Data submission both increases the exposure of the work and the amount of data available to the scientific community. Guidelines for submitting data can be found here.
We have incorporated data from several large scale expression databases into GXD. Database entries in GXD link to the corresponding entries at the providers' websites. In this way, users can take advantage of GXD's data integration and querying capabilities while having easy access to additional resources at the providers' sites.
We have also incorporated directly submitted data from the following major studies:
The Adult Mouse Anatomy (MA) ontology has been developed and continues to be refined to provide standardized nomenclature for annotating expression and phenotype data for the adult mouse. The MA organizes anatomical structures for the postnatal mouse spatially and functionally. You can use the browser to view anatomical terms and their relationships in a hierarchical display. We welcome your input. Please contact us with suggestions, additions, or questions about the MA.
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Hayamizu TF, Wicks MN, Davidson DR, Burger A, Ringwald M, Baldock RA. EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. J Biomed Semantics. 2013 Aug 26;4(1):15. PubMed
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Hayamizu TF, Mangan M, Corradi JP, Kadin JA, Ringwald M. The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. Genome Biol, 2005;6:R29 PubMed.
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Ringwald M, Eppig JT, Richardson JE. 2000. GXD: integrated access to gene expression data for the laboratory mouse. Trends Genet 16:188-190. PubMed
Bard JBL, Kaufman MH, Dubreuil C, Brune RM, Burger A, Baldock RA and Davidson DR. 1998. An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. Mech Dev 74:111-120.
Ringwald M, Baldock R, Bard J, Kaufmann M, Eppig JT, Richardson JE, Nadeau JH, Davidson D. 1994. A database for mouse development. Science 265: 2033-2034. PubMed
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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