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Galnt13 Gene Detail
Summary
  • Symbol
    Galnt13
  • Name
    polypeptide N-acetylgalactosaminyltransferase 13
  • Synonyms
    pp-GalNAc-T13
  • Feature Type
    protein coding gene
  • IDs
    MGI:2139447
    NCBI Gene: 271786
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:54326329-55008321 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 30.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3056 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139447
 protein coding gene Chr2:54326217-55008321 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025741
 protein coding gene Chr2:53862279-54557917 (+)
A/J MGP_AJ_G0025717
 protein coding gene Chr2:51770214-52444411 (+)
AKR/J MGP_AKRJ_G0025687
 protein coding gene Chr2:53273638-53962801 (+)
BALB/cJ MGP_BALBcJ_G0025712
 protein coding gene Chr2:51867979-52566170 (+)
C3H/HeJ MGP_C3HHeJ_G0025473
 protein coding gene Chr2:53296473-53980588 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026158
 protein coding gene Chr2:55447759-56200475 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023564
 protein coding gene Chr2:49603209-50221042 (+)
CAST/EiJ MGP_CASTEiJ_G0024938
 protein coding gene Chr2:53324300-54009280 (+)
CBA/J MGP_CBAJ_G0025453
 protein coding gene Chr2:57560933-58312448 (+)
DBA/2J MGP_DBA2J_G0025584
 protein coding gene Chr2:51388460-52055549 (+)
FVB/NJ MGP_FVBNJ_G0025546
 protein coding gene Chr2:51053998-51709105 (+)
LP/J MGP_LPJ_G0025672
 protein coding gene Chr2:53702333-54439097 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025577
 protein coding gene Chr2:58621421-59485666 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026216
 protein coding gene Chr2:53177712-53880402 (+)
PWK/PhJ MGP_PWKPhJ_G0024679
 protein coding gene Chr2:51237728-51891463 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024485
 protein coding gene Chr2:53337897-54008330 (+)
WSB/EiJ MGP_WSBEiJ_G0025005
 protein coding gene Chr2:53458747-54143698 (+)



Homology
more
  • Human Ortholog
    GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
  • Synonyms
    GalNAc-T13, LINC01850
  • Links
    NCBI Gene ID: 114805
    neXtProt AC: NX_Q8IUC8
    UniProt: Q8IUC8

  • Chr Location
    2q23.3-q24.1; chr2:153068293-154456574 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 2 alleles in 2 genetic backgrounds
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Galnt13 is expressed exclusively in neuronal cells. Conditional animals can be used with cre-expressing strains to produce total or tissue-specific deletion of this locus.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    821
  • Tissues
    112
  • cDNA Data
    17
  • Literature Summary
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000060988 Ensembl Gene Model | MGI Sequence Detail 681993 C57BL/6J ±  kb
    transcript ENSMUST00000112634 Ensembl | MGI Sequence Detail 7639 Not Applicable  
    polypeptide ENSMUSP00000108253 Ensembl | MGI Sequence Detail 592 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 17
      Primer pair 3

      Microarray probesets 2
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 7
      Gene Ontology 6
      Phenotypes 10
    • Earliest
      J:67674 Hennet T, et al., T-cell-specific deletion of a polypeptide N-acetylgalactosaminyl-transferase gene by site-directed recombination. Proc Natl Acad Sci U S A. 1995 Dec 19;92(26):12070-4
    • Latest
      J:285242 Peluso G, et al., Loss of the disease-associated glycosyltransferase Galnt3 alters Muc10 glycosylation and the composition of the oral microbiome. J Biol Chem. 2020 Jan 31;295(5):1411-1425
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory