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1700048O20Rik Gene Detail
Summary
  • Symbol
    1700048O20Rik
  • Name
    RIKEN cDNA 1700048O20 gene
  • Synonyms
    1700022O21Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920637
    NCBI Gene: 69430
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121766341-121776082 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    336 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920637
 lncRNA gene Chr9:121766268-121776083 (+)
129S1/SvImJ ENSMUSG00200031438
 lncRNA gene Chr9:118890889-118900690 (+)
A/J ENSMUSG00195028327
 lncRNA gene Chr9:118053861-118063658 (+)
AKR/J ENSMUSG00220020018
 lncRNA gene Chr9:118505758-118515554 (+)
BALB/cJ ENSMUSG00180029638
 lncRNA gene Chr9:118591856-118601655 (+)
C3H/HeJ ENSMUSG00175020049
 lncRNA gene Chr9:118830112-118839911 (+)
C57BL/6NJ ENSMUSG00215032351
 lncRNA gene Chr9:118720950-118730743 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032837
 protein coding gene Chr9:117302351-117311978 (+)
CAST/EiJ ENSTCUG00005016873
 lncRNA gene Chr9:118436342-118446134 (+)
CBA/J ENSMUSG00210044713
 lncRNA gene Chr9:118545474-118555268 (+)
DBA/2J ENSMUSG00185016831
 lncRNA gene Chr9:118881111-118890905 (+)
FVB/NJ ENSMUSG00205034521
 lncRNA gene Chr9:118720470-118730267 (+)
JF1/MsJ ENSUMUG00000050661
 lncRNA gene Chr9:118703808-118713539 (+)
LP/J ENSMUSG00230038183
 lncRNA gene Chr9:119033270-119043065 (+)
NOD/ShiLtJ ENSMUSG00190015324
 lncRNA gene Chr9:118488397-118498192 (+)
NZO/HlLtJ ENSMUSG00225023844
 lncRNA gene Chr9:119293687-119303484 (+)
PWK/PhJ ENSLUMG00010037967
 lncRNA gene Chr9:118591417-118601298 (+)
SPRET/EiJ ENSMSPG00010024224
 lncRNA gene Chr9:120304623-120315283 (+)
WSB/EiJ ENSIUOG00005023707
 lncRNA gene Chr9:117913927-117923726 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    61
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69430 NCBI Gene Model | MGI Sequence Detail 9742 C57BL/6J ±  kb
transcript NR_033553 RefSeq | MGI Sequence Detail 1908 C57BL/6  
polypeptide Q3V488 UniProt | EBI | MGI Sequence Detail 91 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001909 Krueppel-associated box
    IPR036051 Krueppel-associated box domain superfamily
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
Other
Accession IDs
less
MGI:1916680
References
more
  • Summaries
    All 13
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory