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Lhfpl5
Gene Detail
Symbol

Name
ID
Lhfpl5
lipoma HMGIC fusion partner-like 5
MGI:1915382
Synonyms
9330179O15Rik, LOC328789, Tmhs
Feature Type
protein coding gene
Genetic Map
Chromosome 17
14.77 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr17:28575718-28583593 bp, + strand
From VEGA annotation of GRCm38

  7876 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18794  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: LHFPL5
Protein SuperFamily: Lipoma HMGIC fusion partner precursor
Gene Tree: Lhfpl5

Human
homologs
LHFPL5, lipoma HMGIC fusion partner-like 5
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 222662
neXtProt AC: NX_Q8TAF8

Human Synonyms: DFNB67, dJ510O8.8, TMHS

Human Chr (Location): 6p21.31; chr6:35797420-35824075 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human LHFPL5

Mutations,
alleles, and
phenotypes
All mutations/alleles(23) : Chemically induced (ENU)(1) Gene trapped(17) Spontaneous(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mutations in this gene result in deafness and vestibular dysfunction with severe degeneration of the organ of Corti.
 
Phenotype Images(1)
Interactions
Lhfpl5 interacts with 38 markers (Mir29b-1, Mir29b-2, Mir98, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (82)    Tissues (38)    Images (10)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 27
In situ reporter (knock in) 34
Northern blot 12
RT-PCR 9
cDNA source data(7)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase lhfpl5    NEW 
Molecular
reagents
All nucleic(9) cDNA(7) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000024253 (Evidence)
Ensembl Gene Model ENSMUSG00000062252 (Evidence)
Entrez Gene 328789 (Evidence)
UniGene 284760
DFCI TC1586883
DoTS DT.97387922
NIA Mouse Gene Index U017751
Consensus CDS Project CCDS37530.1
International Mouse Phenotyping Consortium Status Lhfpl5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024253 VEGA Gene Model | MGI Sequence Detail 7876 C57BL/6J ±  kb
transcript OTTMUST00000059371 VEGA | MGI Sequence Detail 1248 Not Applicable 
polypeptide OTTMUSP00000028873 VEGA | MGI Sequence Detail 219 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(59 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019372 Lipoma HMGIC fusion partner-like protein
Protein Ontology PR:000009789 tetraspan membrane protein of hair cell stereocilia
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:218911 Beurg M, et al., Subunit determination of the conductance of hair-cell mechanotransducer channels. Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1589-94
All references(29)
Other
accession IDs
MGI:2683900

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory