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Syt3
Gene Detail
Symbol

Name
ID
Syt3
synaptotagmin III
MGI:99665
Feature Type
protein coding gene
Genetic Map
Chromosome 7
28.83 cM
Detailed Genetic Map ± 1 cM


Mapping data(9)
Sequence Map
Chr7:44384102-44400187 bp, + strand
From VEGA annotation of GRCm38

  16086 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9617  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SYT3
Protein SuperFamily: B/K protein/synaptotagmin
Gene Tree: Syt3

Human
homologs
SYT3, synaptotagmin III
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 84258
neXtProt AC: NX_Q9BQG1

Human Synonyms: SytIII

Human Chr (Location): 19q13.33; chr19:50621860-50658127 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(7) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Syt3 interacts with 148 markers (Mir10a, Mir10b, Mir15a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (103)    Tissues (94)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 103
cDNA source data(10)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase syt3    NEW 
Molecular
reagents
All nucleic(14) cDNA(13) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000031834 (Evidence)
Ensembl Gene Model ENSMUSG00000030731 (Evidence)
Entrez Gene 20981 (Evidence)
UniGene 4824
DFCI TC1581817, TC1676040
DoTS DT.101369932, DT.487395
NIA Mouse Gene Index U008039
Consensus CDS Project CCDS21205.1
International Mouse Phenotyping Consortium Status Syt3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031834 VEGA Gene Model | MGI Sequence Detail 16086 C57BL/6J ±  kb
transcript OTTMUST00000078932 VEGA | MGI Sequence Detail 2627 Not Applicable 
polypeptide OTTMUSP00000042037 VEGA | MGI Sequence Detail 587 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(6) UniProt(4)
Polymorphisms
RFLP(3) : SNPs within 2kb(149 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000008 C2 calcium-dependent membrane targeting
InterPro IPR001565 Synaptotagmin
Protein Ontology PR:000015905 synaptotagmin-3
References
(Earliest) J:1973 Willison K, The mouse Brachyury gene and mesoderm formation. Trends Genet. 1990 Apr;6(4):104-5
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(53)
Other
accession IDs
MGD-MRK-16450, MGI:2141926

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory