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Rabggtb Gene Detail
Summary
  • Symbol
    Rabggtb
  • Name
    Rab geranylgeranyl transferase, b subunit
  • Feature Type
    protein coding gene
  • IDs
    MGI:99537
    NCBI Gene: 19352
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:153907289-153912966 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 78.76 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    19 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99537
protein coding gene Chr3:153907287-153913009 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027999
protein coding gene Chr3:157874547-157880257 (-)
A/J MGP_AJ_G0027958
protein coding gene Chr3:152124803-152130525 (-)
AKR/J MGP_AKRJ_G0027924
protein coding gene Chr3:156198047-156203757 (-)
BALB/cJ MGP_BALBcJ_G0027970
protein coding gene Chr3:151934097-151939819 (-)
C3H/HeJ MGP_C3HHeJ_G0027700
protein coding gene Chr3:156564514-156570236 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028413
protein coding gene Chr3:163017065-163022787 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025751
protein coding gene Chr3:146899532-146905183 (-)
CAST/EiJ MGP_CASTEiJ_G0027153
protein coding gene Chr3:156677329-156683046 (-)
CBA/J MGP_CBAJ_G0027675
protein coding gene Chr3:168897578-168903288 (-)
DBA/2J MGP_DBA2J_G0027815
protein coding gene Chr3:151206552-151212274 (-)
FVB/NJ MGP_FVBNJ_G0027782
protein coding gene Chr3:148585545-148591255 (-)
LP/J MGP_LPJ_G0027926
protein coding gene Chr3:159203699-159209409 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027815
protein coding gene Chr3:177364746-177370468 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028472
protein coding gene Chr3:155839677-155845399 (-)
PWK/PhJ MGP_PWKPhJ_G0026876
protein coding gene Chr3:151122013-151127698 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026704
protein coding gene Chr3:153995367-154001090 (-)
WSB/EiJ MGP_WSBEiJ_G0027233
protein coding gene Chr3:156824647-156830369 (-)



Homology
more
  • Human Ortholog
    RABGGTB, Rab geranylgeranyltransferase subunit beta
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RABGGTB, Rab geranylgeranyltransferase subunit beta
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GGTB
  • Links
    NCBI Gene ID: 5876
    neXtProt AC: NX_P53611
    UniProt: P53611

  • Chr Location
    1p31.1; chr1:75786194-75795090 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 19352 NCBI Gene Model | MGI Sequence Detail 5678 C57BL/6J ±  kb
transcript NR_028096 RefSeq | MGI Sequence Detail 1574 C57BL/6  
polypeptide P53612 UniProt | EBI | MGI Sequence Detail 339 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 131
    cDNA 128
    Primer pair 1
    Other 2

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-16315
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:26601 Wei LN, et al., Studies of cloning, chromosomal mapping, and embryonic expression of the mouse Rab geranylgeranyl transferase beta subunit. Cell Growth Differ. 1995 May;6(5):607-14
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/09/2019
MGI 6.14
The Jackson Laboratory