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Cntn3 Gene Detail
Summary
  • Symbol
    Cntn3
  • Name
    contactin 3
  • Synonyms
    Pang
  • Feature Type
    protein coding gene
  • IDs
    MGI:99534
    NCBI Gene: 18488
  • Gene Overview
    MyGene.info: CNTN3
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:102163304-102564623 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 47.52 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2598 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99534
protein coding gene Chr6:102162655-102573101 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031090
protein coding gene Chr6:104253276-104676558 (-)
A/J MGP_AJ_G0031059
protein coding gene Chr6:100269071-100678640 (-)
AKR/J MGP_AKRJ_G0030990
protein coding gene Chr6:103024407-103440781 (-)
BALB/cJ MGP_BALBcJ_G0031070
protein coding gene Chr6:100233500-100647255 (-)
C3H/HeJ MGP_C3HHeJ_G0030638
protein coding gene Chr6:80954524-81384027 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031529
protein coding gene Chr6:106909252-107337830 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028693
protein coding gene Chr6:97984870-98281705 (-)
CAST/EiJ MGP_CASTEiJ_G0030177
protein coding gene Chr6:103316100-103614230 (-)
CBA/J MGP_CBAJ_G0030756
protein coding gene Chr6:111014667-111487863 (-)
DBA/2J MGP_DBA2J_G0030909
protein coding gene Chr6:99406598-99818841 (-)
FVB/NJ MGP_FVBNJ_G0030863
protein coding gene Chr6:98540845-98943525 (-)
LP/J MGP_LPJ_G0030989
protein coding gene Chr6:104312225-104740207 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030897
protein coding gene Chr6:114813918-115157710 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031556
protein coding gene Chr6:102944212-103238876 (-)
PWK/PhJ MGP_PWKPhJ_G0029893
protein coding gene Chr6:98413985-98704447 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029721
protein coding gene Chr6:101795132-102121855 (-)
WSB/EiJ MGP_WSBEiJ_G0030261
protein coding gene Chr6:103448458-103765753 (-)



Homology
more
  • Human Ortholog
    CNTN3, contactin 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CNTN3, contactin 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BIG-1, PANG, PCS
  • Links
    NCBI Gene ID: 5067
    neXtProt AC: NX_Q9P232
    UniProt: Q9P232

  • Chr Location
    3p12.3; chr3:74262568-74614448 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 18488 NCBI Gene Model | MGI Sequence Detail 401320 C57BL/6J ±  kb
transcript NM_008779 RefSeq | MGI Sequence Detail 5183 Not Specified  
polypeptide Q07409 UniProt | EBI | MGI Sequence Detail 1028 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    Genomic 2
    cDNA 16
    Primer pair 2
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-16312
References
more
  • Summaries
    All 39
    Developmental Gene Expression 9
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:16948 Connelly MA, et al., PANG, a gene encoding a neuronal glycoprotein, is ectopically activated by intracisternal A-type particle long terminal repeats in murine plasmacytomas. Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1337-41
  • Latest
    J:237301 Nikolaienko RM, et al., Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues. J Biol Chem. 2016 Oct 07;291(41):21335-21349

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory