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Rab11b
Gene Detail
 Symbol
Name
ID
Rab11b
RAB11B, member RAS oncogene family
MGI:99425
Synonyms A730055L17Rik
Feature Type protein coding gene
Genetic Map
Chromosome 17
17.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(6)
Sequence Map
Chr17:33742484-33760530 bp, - strand
From VEGA annotation of GRCm38

  18047 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68691  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab11b

Human
homologs
Human Homolog RAB11B, RAB11B, member RAS oncogene family
NCBI Gene ID 9230
neXtProt AC  NX_Q15907
Human Synonyms  H-YPT3
Human Chr (Location)  19p13.2; chr19:8390321-8404434 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Gene trapped(12) Targeted(2)
Interactions
Rab11b interacts with 271 markers (Mir1b, Mir7-1, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (42 annotations)
Process cellular response to acidity, constitutive secretory pathway, ...
Component cell, cell junction, ...
Function GDP binding, GTPase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (20)    Tissues (11)   
Theiler Stages: 9, 16, 19, 28
Assay TypeResults
RNA in situ 2
RT-PCR 18
cDNA source data(195)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(201) Genomic(4) cDNA(195) Primer pair(2)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000037204 (Evidence)
Ensembl Gene ModelENSMUSG00000077450 (Evidence)
Entrez Gene19326 (Evidence)
UniGene387587
DFCITC1573303, TC1601903, TC1615736, TC1631509, TC1696613
DoTSDT.527118, DT.55101097, DT.91555993, DT.99869606
NIA Mouse Gene IndexU037688, U037689, U352986
Consensus CDS ProjectCCDS28628.1
International Mouse Knockout Project StatusRab11b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037204 VEGA Gene Model | MGI Sequence Detail 18047 C57BL/6J ±  kb
transcript OTTMUST00000095924 VEGA | MGI Sequence Detail 6109 Not Applicable 
polypeptide OTTMUSP00000053555 VEGA | MGI Sequence Detail 218 Not Applicable 

For the selected sequences
All sequences(93) RefSeq(8) UniProt(6)
Polymorphisms SNPs within 2kb(141 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013580 ras-related protein Rab-11B
References (Earliest) J:19871 Lai F, et al., Molecular analysis of mouse Rab11b: a new type of mammalian YPT/Rab protein. Genomics. 1994 Aug;22(3):610-6
(Latest) J:189966 Sokolowski S, et al., The large conductance calcium-activated K(+) channel interacts with the small GTPase Rab11b. Biochem Biophys Res Commun. 2012 Sep 21;426(2):221-5
All references(46)
Other
accession IDs
MGD-MRK-16188, MGI:2444458

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory