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Hdlbp Gene Detail
Summary
  • Symbol
    Hdlbp
  • Name
    high density lipoprotein (HDL) binding protein
  • Synonyms
    1110005P14Rik, D1Ertd101e
  • Feature Type
    protein coding gene
  • IDs
    MGI:99256
    NCBI Gene: 110611
  • Gene Overview
    MyGene.info: HDLBP
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:93405940-93478815 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.24 cM
  • Mapping Data
    9 experiments
Strain
Comparison
more
  • SNPs within 2kb
    268 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99256
protein coding gene Chr1:93405940-93478917 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016342
protein coding gene Chr1:95030987-95104694 (-)
A/J MGP_AJ_G0016323
protein coding gene Chr1:91623664-91696869 (-)
AKR/J MGP_AKRJ_G0016284
protein coding gene Chr1:94330575-94407436 (-)
BALB/cJ MGP_BALBcJ_G0016279
protein coding gene Chr1:91806409-91880919 (-)
C3H/HeJ MGP_C3HHeJ_G0016108
protein coding gene Chr1:94584549-94660660 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016738
protein coding gene Chr1:98645242-98719734 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014456
protein coding gene Chr1:85881206-85952205 (-)
CAST/EiJ MGP_CASTEiJ_G0015691
protein coding gene Chr1:93914748-93991458 (-)
CBA/J MGP_CBAJ_G0016082
protein coding gene Chr1:101838184-101912587 (-)
DBA/2J MGP_DBA2J_G0016187
protein coding gene Chr1:90819249-90893241 (-)
FVB/NJ MGP_FVBNJ_G0016186
protein coding gene Chr1:89895486-89969144 (-)
LP/J MGP_LPJ_G0016258
protein coding gene Chr1:96208212-96283830 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016211
protein coding gene Chr1:104939985-105019229 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016777
protein coding gene Chr1:94345206-94421780 (-)
PWK/PhJ MGP_PWKPhJ_G0015476
protein coding gene Chr1:90259002-90332749 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015260
protein coding gene Chr1:93297640-93370196 (-)
WSB/EiJ MGP_WSBEiJ_G0015751
protein coding gene Chr1:94165293-94240808 (-)



Homology
more
  • Human Ortholog
    HDLBP, high density lipoprotein binding protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HDLBP, high density lipoprotein binding protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HBP, PRO2900, VGL
  • Links
    NCBI Gene ID: 3069
    neXtProt AC: NX_Q00341
    UniProt: Q00341

  • Chr Location
    2q37.3; chr2:241227264-241315842 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 38035
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: HDLBP
  • Protein SuperFamily
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034088 Ensembl Gene Model | MGI Sequence Detail 72876 C57BL/6J ±  kb
transcript ENSMUST00000170883 Ensembl | MGI Sequence Detail 6231 Not Applicable  
polypeptide ENSMUSP00000127903 Ensembl | MGI Sequence Detail 1268 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 793
    cDNA 791
    Primer pair 2

    Microarray probesets 9
Other
Accession IDs
less
MGD-MRK-16015, MGI:1098739, MGI:1915697, MGI:2138139, MGI:2138160
References
more
  • Summaries
    All 45
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:148410 Combes AN, et al., Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development. Dev Dyn. 2009 May;238(5):1033-41

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory