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Ddx39b Gene Detail
Summary
  • Symbol
    Ddx39b
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
  • Synonyms
    0610030D10Rik, Bat1, Bat-1, Bat1a, D17H6S81E-1, MGC:19235, MGC:38799
  • Feature Type
    protein coding gene
  • IDs
    MGI:99240
    NCBI Gene: 53817
Location & Maps
more
  • Sequence Map
    Chr17:35241746-35253707 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11962 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    DDX39B, DEAD-box helicase 39B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    DDX39B, DEAD-box helicase 39B
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BAT1, D6S81E, UAP56
  • Links
    NCBI Gene ID: 7919
    neXtProt AC: NX_Q13838

  • Chr Location
    6p21.3; chr6:31530219-31542475 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    78
  • Gene trapped
    76
  • Targeted
    2
  • Genomic Mutations
    1 involving Ddx39b
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037268 VEGA Gene Model | MGI Sequence Detail 11962 C57BL/6J ±  kb
transcript OTTMUST00000096125 VEGA | MGI Sequence Detail 2848 Not Applicable  
polypeptide OTTMUSP00000053668 VEGA | MGI Sequence Detail 428 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    155 from dbSNP Build 137
  • RFLP
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000004648 spliceosome RNA helicase BAT1
  • EC
  • InterPro Domains
    IPR011545 DEAD/DEAH box helicase domain
    IPR001650 Helicase, C-terminal
    IPR014001 Helicase superfamily 1/2, ATP-binding domain
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR014014 RNA helicase, DEAD-box type, Q motif
Molecular
Reagents
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  • All nucleic 27
    Genomic 16
    cDNA 10
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
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MGD-MRK-1499, MGD-MRK-1506, MGD-MRK-15997, MGD-MRK-16027, MGD-MRK-7732, MGI:1915639, MGI:3035179
References
more
  • Summaries
    All 44
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:10809 Wroblewski JM, et al., The B144-H-2Db interval and the location of a mouse homologue of the human D6S81E locus. Immunogenetics. 1990;32(3):200-4
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/02/2016
MGI 6.02
The Jackson Laboratory