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Ddx39b
Gene Detail
 Symbol
Name
ID
Ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
MGI:99240
Synonyms 0610030D10Rik, Bat1, Bat-1, Bat1a, D17H6S81E-1, MGC:19235, MGC:38799
Feature Type protein coding gene
Genetic Map
Chromosome 17
18.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr17:35241746-35253707 bp, + strand
From VEGA annotation of GRCm38

  11962 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:48376  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Ddx39b

Human
homologs
Human Homolog DDX39B, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
NCBI Gene ID 7919
neXtProt AC  NX_Q13838
Human Synonyms  BAT1, D6S81E, UAP56
Human Chr (Location)  6p21.3; chr6:31530219-31542475 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(78) : Gene trapped(76) Targeted(2)
Genomic Mutations involving Ddx39b (1)
Incidental mutations (data from APF )
Interactions
Ddx39b interacts with 41 markers (Mir7-1, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (31 annotations)
Process ATP catabolic process, mRNA export from nucleus, ...
Component cytoplasm, nucleus, ...
Function ATP binding, ATP-dependent protein binding, ...
External Resources: FuncBase
Expression
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(27) Genomic(16) cDNA(10) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000037268 (Evidence)
Ensembl Gene ModelENSMUSG00000019432 (Evidence)
Entrez Gene53817 (Evidence)
DFCITC1573167, TC1589594, TC1762384, TC1767472
DoTSDT.101131526, DT.101739111, DT.110549302, DT.110549340, DT.110549424, DT.110549496, DT.60108528, DT.91363595, DT.91411125, DT.94200422, DT.97380293, DT.97396172
EC3.6.4.13
Consensus CDS ProjectCCDS28695.1
International Mouse Knockout Project StatusDdx39b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037268 VEGA Gene Model | MGI Sequence Detail 11962 C57BL/6J ±  kb
transcript OTTMUST00000096122 VEGA | MGI Sequence Detail 1739 Not Applicable 
polypeptide OTTMUSP00000053666 VEGA | MGI Sequence Detail 428 Not Applicable 

For the selected sequences
All sequences(72) RefSeq(4) UniProt(3)
Polymorphisms RFLP(3) : SNPs within 2kb(155 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR014014 RNA helicase, DEAD-box type, Q motif
Protein Ontology PR:000004648 spliceosome RNA helicase BAT1
References (Earliest) J:10809 Wroblewski JM, et al., The B144-H-2Db interval and the location of a mouse homologue of the human D6S81E locus. Immunogenetics. 1990;32(3):200-4
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(46)
Other
accession IDs
MGD-MRK-1499, MGD-MRK-1506, MGD-MRK-15997, MGD-MRK-16027, MGD-MRK-7732, MGI:1915639, MGI:3035179

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory