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Ddx39b
Gene Detail
Symbol

Name
ID
Ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
MGI:99240
Synonyms
0610030D10Rik, Bat1, Bat-1, Bat1a, D17H6S81E-1, MGC:19235, MGC:38799
Feature Type
protein coding gene
Genetic Map
Chromosome 17
18.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr17:35241746-35253707 bp, + strand
From VEGA annotation of GRCm38

  11962 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:48376  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Ddx39b

Human
homologs
Human Homolog DDX39B, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
NCBI Gene ID 7919
neXtProt AC  NX_Q13838
Human Synonyms  BAT1, D6S81E, UAP56
Human Chr (Location)  6p21.3; chr6:31530219-31542475 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(78) : Gene trapped(76) Targeted(2)
Genomic Mutations involving Ddx39b (1)
Incidental mutations (data from APF )
Interactions
Ddx39b interacts with 41 markers (Mir7-1, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (31 annotations)
Process ATP catabolic process, mRNA export from nucleus, ...
Component cytoplasm, nucleus, ...
Function ATP binding, ATP-dependent protein binding, ...
External Resources: FuncBase
Expression
cDNA source data(9)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(27) Genomic(16) cDNA(10) Primer pair(1)
Microarray probesets(5)
Other database
links
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037268 VEGA Gene Model | MGI Sequence Detail 11962 C57BL/6J ±  kb
transcript OTTMUST00000096122 VEGA | MGI Sequence Detail 1739 Not Applicable 
polypeptide OTTMUSP00000053666 VEGA | MGI Sequence Detail 428 Not Applicable 

For the selected sequences
All sequences(72) RefSeq(4) UniProt(3)
Polymorphisms
RFLP(3) : SNPs within 2kb(155 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR014014 RNA helicase, DEAD-box type, Q motif
Protein Ontology PR:000004648 spliceosome RNA helicase BAT1
References
(Earliest) J:10809 Wroblewski JM, et al., The B144-H-2Db interval and the location of a mouse homologue of the human D6S81E locus. Immunogenetics. 1990;32(3):200-4
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(46)
Other
accession IDs
MGD-MRK-1499, MGD-MRK-1506, MGD-MRK-15997, MGD-MRK-16027, MGD-MRK-7732, MGI:1915639, MGI:3035179

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory