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Zfp54 Gene Detail
Summary
  • Symbol
    Zfp54
  • Name
    zinc finger protein 54
  • Synonyms
    clone 18, KRAB10, Zfp-54, Zfp76
  • Feature Type
    protein coding gene
  • IDs
    MGI:99201
    NCBI Gene: 22712
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:21643489-21655646 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 11.40 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    326 from dbSNP Build 142
  • Strain Annotations
    19
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99201
 protein coding gene Chr17:21643489-21655902 (+)
129S1/SvImJ ENSMUSG00200036429
 protein coding gene Chr17:17191376-17203579 (+)
A/J ENSMUSG00195033669
 protein coding gene Chr17:18055662-18067865 (+)
AKR/J ENSMUSG00220023536
 protein coding gene Chr17:17263162-17275579 (+)
BALB/cJ ENSMUSG00180014528
 protein coding gene Chr17:17345910-17358111 (+)
C3H/HeJ ENSMUSG00175036458
 protein coding gene Chr17:17111606-17124023 (+)
C57BL/6NJ ENSMUSG00215041398
 protein coding gene Chr17:17135789-17148203 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021127
 protein coding gene Chr17:16960320-16971785 (+)
CAST/EiJ ENSTCUG00005020476
 protein coding gene Chr17:17687877-17700049 (+)
CBA/J ENSMUSG00210036074
 protein coding gene Chr17:16919517-16931936 (+)
DBA/2J ENSMUSG00185035252
 protein coding gene Chr17:19152102-19164305 (+)
FVB/NJ ENSMUSG00205021481
 protein coding gene Chr17:17635601-17648019 (+)
JF1/MsJ ENSUMUG00000031292
 protein coding gene Chr17:18312701-18324864 (+)
LP/J ENSMUSG00230021819
 protein coding gene Chr17:20550111-20562312 (+)
NOD/ShiLtJ ENSMUSG00190033124
 protein coding gene Chr17:17302161-17314574 (+)
NZO/HlLtJ ENSMUSG00225050520
 protein coding gene Chr17:22473145-22485347 (+)
PWK/PhJ ENSLUMG00010017878
 protein coding gene Chr17:16582005-16594176 (+)
SPRET/EiJ ENSMSPG00010038403
 protein coding gene Chr17:18003144-18014769 (+)
WSB/EiJ ENSIUOG00005038403
 protein coding gene Chr17:17892054-17904255 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    25 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    671
  • Tissues
    67
  • cDNA Data
    18
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 22712 NCBI Gene Model | MGI Sequence Detail 12158 C57BL/6J ±  kb
    transcript NM_001379358 RefSeq | MGI Sequence Detail 3310 ZRU/MplStud  
    polypeptide E9PW05 UniProt | EBI | MGI Sequence Detail 585 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR050752 C2H2-type zinc-finger domain-containing protein
      IPR001909 Krueppel-associated box
      IPR036051 Krueppel-associated box domain superfamily
      IPR036236 Zinc finger C2H2 superfamily
      IPR013087 Zinc finger C2H2-type
      IPR050331 Zinc finger PRDM4/PRDM1/PRDM14-like
    Molecular
    Reagents
    less
    • All nucleic 23
      Genomic 4
      cDNA 18
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-15898, MGD-MRK-15953, MGD-MRK-36351, MGI:107774
    References
    more
    • Summaries
      All 57
      Developmental Gene Expression 6
      Gene Ontology 5
      Phenotypes 25
    • Earliest
      J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory