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Zfp40 Gene Detail
Summary
  • Symbol
    Zfp40
  • Name
    zinc finger protein 40
  • Synonyms
    NTfin12, Zfp-40
  • Feature Type
    protein coding gene
  • IDs
    MGI:99185
    NCBI Gene: 22700
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:23392843-23412226 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 11.56 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    441 from dbSNP Build 142
  • Strain Annotations
    19
  • RFLP
    3
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99185
 protein coding gene Chr17:23392843-23412226 (-)
129S1/SvImJ ENSMUSGG00200054419
 protein coding gene Chr17:18829756-18833420 (-)
A/J ENSMUSGG00195055034
 protein coding gene Chr17:19847939-19851603 (-)
AKR/J ENSMUSGG00220054363
 protein coding gene Chr17:18890099-18893762 (-)
BALB/cJ ENSMUSGG00180055290
 protein coding gene Chr17:19130542-19134206 (-)
C3H/HeJ ENSMUSGG00175054656
 protein coding gene Chr17:18904840-18908503 (-)
C57BL/6NJ ENSMUSGG00215055373
 protein coding gene Chr17:18886635-18890298 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021144
 protein coding gene Chr17:19047652-19064524 (-)
CAST/EiJ ENSTCUGG00005053970
 protein coding gene Chr17:19473672-19477335 (-)
CBA/J ENSMUSGG00210054491
 protein coding gene Chr17:18739916-18743579 (-)
DBA/2J ENSMUSGG00185057978
 protein coding gene Chr17:20936789-20940453 (-)
FVB/NJ ENSMUSGG00205054090
 protein coding gene Chr17:19276626-19280289 (-)
JF1/MsJ ENSUMUGG00000058777
 protein coding gene Chr17:20385499-20389161 (-)
LP/J ENSMUSGG00230055914
 protein coding gene Chr17:22334716-22338380 (-)
NOD/ShiLtJ ENSMUSGG00190054627
 protein coding gene Chr17:18818781-18822444 (-)
NZO/HlLtJ ENSMUSGG00225055730
 protein coding gene Chr17:24257781-24261445 (-)
PWK/PhJ ENSLUMGG00010053777
 protein coding gene Chr17:18327598-18331258 (-)
SPRET/EiJ ENSMSPG00010035540
 protein coding gene Chr17:19739305-19756095 (-)
WSB/EiJ ENSIUOGG00005054350
 protein coding gene Chr17:19562614-19566277 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    715
  • Tissues
    102
  • cDNA Data
    11
  • Literature Summary
    5
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 22700 NCBI Gene Model | MGI Sequence Detail 19384 C57BL/6J ±  kb
transcript NM_001357697 RefSeq | MGI Sequence Detail 4197 ZRU/MplStud  
polypeptide NP_033581 RefSeq | MGI Sequence Detail 796 ZRU/MplStud  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR001909 Krueppel-associated box
    IPR036051 Krueppel-associated box domain superfamily
    IPR036236 Zinc finger C2H2 superfamily
    IPR013087 Zinc finger C2H2-type
    IPR050331 Zinc finger PRDM4/PRDM1/PRDM14-like
    IPR050758 Zinc finger protein, C2H2-type
Molecular
Reagents
less
  • All nucleic 18
    Genomic 7
    cDNA 11

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-15882, MGD-MRK-15937
References
more
  • Summaries
    All 51
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 23
  • Earliest
    J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory