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Ift88 Gene Detail
Summary
  • Symbol
    Ift88
  • Name
    intraflagellar transport 88
  • Synonyms
    fxo, IFT88, Oak Ridge polycystic kidneys, orpk, polaris, Tg737, Tg737Rpw, TgN737Rpw, Ttc10
  • Feature Type
    protein coding gene
  • IDs
    MGI:98715
    NCBI Gene: 21821
  • Gene Overview
    MyGene.info: IFT88
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:57424069-57517936 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 30.10 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    286 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98715
protein coding gene Chr14:57424062-57517936 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021406
protein coding gene Chr14:51604748-51708778 (+)
A/J MGP_AJ_G0021367
protein coding gene Chr14:50586475-50682126 (+)
AKR/J MGP_AKRJ_G0021342
protein coding gene Chr14:52355060-52456875 (+)
BALB/cJ MGP_BALBcJ_G0021370
protein coding gene Chr14:50533498-50628789 (+)
C3H/HeJ MGP_C3HHeJ_G0021149
protein coding gene Chr14:52010189-52108620 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021809
protein coding gene Chr14:54167350-54261438 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019349
protein coding gene Chr14:48673039-48763857 (+)
CAST/EiJ MGP_CASTEiJ_G0020667
protein coding gene Chr14:48347240-48441551 (+)
CBA/J MGP_CBAJ_G0021116
protein coding gene Chr14:55747675-55868441 (+)
DBA/2J MGP_DBA2J_G0021237
protein coding gene Chr14:50265047-50358910 (+)
FVB/NJ MGP_FVBNJ_G0021218
protein coding gene Chr14:49649484-49746793 (+)
LP/J MGP_LPJ_G0021312
protein coding gene Chr14:52651957-52751712 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021246
protein coding gene Chr14:55119308-55223180 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021833
protein coding gene Chr14:51509587-51614162 (+)
PWK/PhJ MGP_PWKPhJ_G0020410
protein coding gene Chr14:46801101-46897264 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020243
protein coding gene Chr14:47575713-47674168 (+)
WSB/EiJ MGP_WSBEiJ_G0020719
protein coding gene Chr14:51829999-51928243 (+)



Homology
more
  • Human Ortholog
    IFT88, intraflagellar transport 88
  • Vertebrate Orthologs
    10
  • Human Ortholog
    IFT88, intraflagellar transport 88
    Orthology source: HomoloGene, HGNC
  • Synonyms
    D13S1056E, DAF19, hTg737, TG737, TTC10
  • Links
    NCBI Gene ID: 8100
    neXtProt AC: NX_Q13099
    UniProt: Q13099

  • Chr Location
    13q12.11; chr13:20566446-20691437 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4761
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: IFT88
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with Ift88 mouse models

Human Disease Mouse Models
      
IDs
View 4 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    6 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    103 phenotypes from 7 alleles in 17 genetic backgrounds
    8 phenotypes from multigenic genotypes
    118 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display early to mid-gestation lethality, random patterning of the left-right body axis, neural tube defects, pericardial sac expansion, enlarged limb buds, polydactyly, and absent embryonic node cilia.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 21821 NCBI Gene Model | MGI Sequence Detail 93868 C57BL/6J ±  kb
    transcript NM_009376 RefSeq | MGI Sequence Detail 3097 C57BL/6  
    polypeptide Q61371 UniProt | EBI | MGI Sequence Detail 824 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 43
      Genomic 6
      cDNA 36
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-15052, MGI:2145834
    References
    more
    • Summaries
      All 214
      Developmental Gene Expression 56
      Diseases 6
      Gene Ontology 58
      Phenotypes 118
    • Earliest
      J:18508 Moyer JH, et al., Candidate gene associated with a mutation causing recessive polycystic kidney disease in mice. Science. 1994 May 27;264(5163):1329-33
    • Latest
      J:278524 Zhang Y, et al., Elevating Growth Factor Responsiveness and Axon Regeneration by Modulating Presynaptic Inputs. Neuron. 2019 Jul 3;103(1):39-51.e5

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    10/15/2019
    MGI 6.14
    The Jackson Laboratory