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Tcte1
Gene Detail
Symbol

Name
ID
Tcte1
t-complex-associated testis expressed 1
MGI:98640
STS
Synonyms
D17Sil1, Tcte-1
Feature Type
protein coding gene
Genetic Map
Chromosome 17
22.54 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(8)
Sequence Map
Chr17:45523434-45542679 bp, + strand
From NCBI annotation of GRCm38

  19246 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8434  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TCTE1
Gene Tree: Tcte1

Human
homologs
TCTE1, t-complex-associated-testis-expressed 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 202500
neXtProt AC: NX_Q5JU00

Human Synonyms: D6S46, FAP155

Human Chr (Location): 6p21.1; chr6:44280160-44297721 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Tcte1 interacts with 252 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(3)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) Genomic(1) cDNA(3) Other(1)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000023949 (Evidence)
Entrez Gene 21645 (Evidence)
NIA Mouse Gene Index U018024
Consensus CDS Project CCDS37629.1
International Mouse Phenotyping Consortium Status Tcte1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 21645 NCBI Gene Model | MGI Sequence Detail 19246 C57BL/6J ±  kb
transcript NM_013688 RefSeq | MGI Sequence Detail 3074 C57BL/6 
polypeptide A6H639 UniProt | EBI | MGI Sequence Detail 498 Not Applicable 

For the selected sequences
All sequences(14) RefSeq(2) UniProt(2)
Polymorphisms
RFLP(3) : SNPs within 2kb(117 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000016207 T-complex-associated testis-expressed protein 1
Graphical View of Protein Domain Structure
References
(Earliest) J:8839 Rappold GA, et al., Identification of a testis-specific gene from the mouse t-complex next to a CpG-rich island. EMBO J. 1987 Jul;6(7):1975-80
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)
Other
accession IDs
MGD-MRK-14943, MGD-MRK-14946, MGD-MRK-4780

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory