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Tcte1 Gene Detail
Summary
  • Symbol
    Tcte1
  • Name
    t-complex-associated testis expressed 1
  • Synonyms
    D17Sil1, Tcte-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:98640
    NCBI Gene: 21645
Location & Maps
more
  • Sequence Map
    Chr17:45523434-45542679 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      19246 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 22.54 cM, cytoband C
  • Mapping Data
    8 experiments
  • Sequence Tag
Homology
more
  • Human Ortholog
    TCTE1, t-complex-associated-testis-expressed 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TCTE1, t-complex-associated-testis-expressed 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    D6S46, DRC5, FAP155
  • Links
    NCBI Gene ID: 202500
    neXtProt AC: NX_Q5JU00

  • Chr Location
    6p21.1; chr6:44280160-44297721 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 8434
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: TCTE1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    5
  • Gene trapped
    1
  • Targeted
    4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 21645 NCBI Gene Model | MGI Sequence Detail 19246 C57BL/6J ±  kb
transcript NM_013688 RefSeq | MGI Sequence Detail 3074 C57BL/6  
polypeptide A6H639 UniProt | EBI | MGI Sequence Detail 498 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    117 from dbSNP Build 142
  • RFLP
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000016207 T-complex-associated testis-expressed protein 1
  • InterPro Domains
    IPR001611 Leucine-rich repeat
    IPR032675 Leucine-rich repeat domain, L domain-like
Molecular
Reagents
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  • All nucleic 5
    Genomic 1
    cDNA 3
    Other 1

    Microarray probesets 4
Other
Accession IDs
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MGD-MRK-14943, MGD-MRK-14946, MGD-MRK-4780
References
more
  • Summaries
    All 27
    Phenotypes 6
  • Earliest
    J:8839 Rappold GA, et al., Identification of a testis-specific gene from the mouse t-complex next to a CpG-rich island. EMBO J. 1987 Jul;6(7):1975-80
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory